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The map label for this gene is cydA [H]

Identifier: 94972172

GI number: 94972172

Start: 323147

End: 324559

Strand: Direct

Name: cydA [H]

Synonym: Dgeo_2705

Alternate gene names: 94972172

Gene position: 323147-324559 (Clockwise)

Preceding gene: 94972173

Following gene: 94972171

Centisome position: 56.28

GC content: 63.41

Gene sequence:

>1413_bases
ATGACAGAGATTTTCGGCTTCTCGGCCCTCGACCTCTCGCGCTTCCAGTTTGCCACCACCAGCATCTTTCACTACTTCTT
TGTGCCCTTTACGGTGGGCTTCGCGCTCATCATCGCCATCCTCCAGACCATCGCTTACCGCACCGGCGACCCAAAGATGG
AGAACCTCACCCGCTTTTTTGGGCACCTGTTCTTCATCAACTTTGCGGTGGGTGTGGTCACCGGGATTGTGCAGGAGTTT
CAGTTCGGCATGAACTGGCAGGGCTTTTCCAACTTCGTGGGGAATATCTTCGGGGTGCCGCTCGCGCTGGAGGTGCTGAT
GGCCTTTTTCCTGGAGAGCACCTTCCTGGGGTTGTGGTGGTTCGGCAAGGGCAAGATTCCCGCGTGGCTGAGCCTCGCGT
CCATCTGGATTGTGGCGCTGGGGACCACGGTGAGTGCCTTTTGGATCATCATCGCCAACGCTTGGATGCAGCACCCGGTG
GGCTTCGAAATCAAGAATGGCCGGGCCGTGATGACCGACGCCTGGGCCATCGTCACCAACCCCAAGGGCCTGGAGTGGTT
CGCACACATCTGGGCGGGGAGCCTGACGGTGGGGGCCTTTTTCGTGCTCGCGGTCAGTGCTTACCACCTGCGGCGGCGGC
ACAACGTCGAGGCCTTCCGGGTGAGCTTCCGGGTGGCGCTGCTGACCGCGCTGATTGGCTCGGCGGGCGTCATCGCCGCC
GGGCACACCCAGGGCCAGAGCGCGGTGCGCGACCAGCCCATGAAGTACGCGGCCTTCAGCGCCCTGTGGGAGACACCTGC
GGGCAACCAGATGCCCGAAAGCTTGGTTGCCCTGCCCAGCAATACCCTGCGCGAGAACCGCTTTGAAATCACCGTGCCTT
ACCTGGGGTCTTTCCTCGCCTTTAACAACTTCACGGGGAAGGCCAAGGGCCTCAACGAGCTGCAAGCCGAATACGAGGCG
CGGTACGGCCCCGGCAACTACATCCCCTTCGTCTGGCCGGTGTACTGGGCTTTTCGGGTGATGGTGGGGCTGGGGTTCTT
GATGCTGCTCGTCGCGCTGGTTTACGTCTGGCGCTGGCGGCAGGGCAAGCTCGATGACCCAGGGCGGCTCTATCCCTTGC
TGCTCGCGATGCCGCTCGCGCCGCACCTCGCCAACTTCACGGGCTGGATTGCCACCGAGATGGGCCGCCAGCCCTGGATT
GTGCAGGGCCTGTTGCGCACGCAGGACGCCGTGAGCAACCTCCCAGTCCAGATGGTGCTGCTCTCGCTGGTCGCCTTTTG
GGTGGTGTACCTCACCCTGATTGGGCTGGACGTGTTCCTCCTCACCCGCACCGCCCGTGCCGGGATGCACGAGCCGGATG
TGGAGACGCCCTCGCTGCCCGCCCCGCACTACCTCGCGGAAGGAGGGGCCTGA

Upstream 100 bases:

>100_bases
TCGTCGTGACCCACCGCCCCGCGCCCCTCGCGTGGGCCGACCGGGTGCTCACCCTTCAGGCTGGACACCTCCGCGAAGAC
TCCCTCCACAGGAGAAGTGC

Downstream 100 bases:

>100_bases
TGGACCTGCCGACCCTGTGGTTTGCCCTCACGGGCCTGATTTTCACGGTCTACTTCTTCCTCGACGGTTTTGATTTCGGG
GTGGGGGTCTTGCAGCCCTT

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MTEIFGFSALDLSRFQFATTSIFHYFFVPFTVGFALIIAILQTIAYRTGDPKMENLTRFFGHLFFINFAVGVVTGIVQEF
QFGMNWQGFSNFVGNIFGVPLALEVLMAFFLESTFLGLWWFGKGKIPAWLSLASIWIVALGTTVSAFWIIIANAWMQHPV
GFEIKNGRAVMTDAWAIVTNPKGLEWFAHIWAGSLTVGAFFVLAVSAYHLRRRHNVEAFRVSFRVALLTALIGSAGVIAA
GHTQGQSAVRDQPMKYAAFSALWETPAGNQMPESLVALPSNTLRENRFEITVPYLGSFLAFNNFTGKAKGLNELQAEYEA
RYGPGNYIPFVWPVYWAFRVMVGLGFLMLLVALVYVWRWRQGKLDDPGRLYPLLLAMPLAPHLANFTGWIATEMGRQPWI
VQGLLRTQDAVSNLPVQMVLLSLVAFWVVYLTLIGLDVFLLTRTARAGMHEPDVETPSLPAPHYLAEGGA

Sequences:

>Translated_470_residues
MTEIFGFSALDLSRFQFATTSIFHYFFVPFTVGFALIIAILQTIAYRTGDPKMENLTRFFGHLFFINFAVGVVTGIVQEF
QFGMNWQGFSNFVGNIFGVPLALEVLMAFFLESTFLGLWWFGKGKIPAWLSLASIWIVALGTTVSAFWIIIANAWMQHPV
GFEIKNGRAVMTDAWAIVTNPKGLEWFAHIWAGSLTVGAFFVLAVSAYHLRRRHNVEAFRVSFRVALLTALIGSAGVIAA
GHTQGQSAVRDQPMKYAAFSALWETPAGNQMPESLVALPSNTLRENRFEITVPYLGSFLAFNNFTGKAKGLNELQAEYEA
RYGPGNYIPFVWPVYWAFRVMVGLGFLMLLVALVYVWRWRQGKLDDPGRLYPLLLAMPLAPHLANFTGWIATEMGRQPWI
VQGLLRTQDAVSNLPVQMVLLSLVAFWVVYLTLIGLDVFLLTRTARAGMHEPDVETPSLPAPHYLAEGGA
>Mature_469_residues
TEIFGFSALDLSRFQFATTSIFHYFFVPFTVGFALIIAILQTIAYRTGDPKMENLTRFFGHLFFINFAVGVVTGIVQEFQ
FGMNWQGFSNFVGNIFGVPLALEVLMAFFLESTFLGLWWFGKGKIPAWLSLASIWIVALGTTVSAFWIIIANAWMQHPVG
FEIKNGRAVMTDAWAIVTNPKGLEWFAHIWAGSLTVGAFFVLAVSAYHLRRRHNVEAFRVSFRVALLTALIGSAGVIAAG
HTQGQSAVRDQPMKYAAFSALWETPAGNQMPESLVALPSNTLRENRFEITVPYLGSFLAFNNFTGKAKGLNELQAEYEAR
YGPGNYIPFVWPVYWAFRVMVGLGFLMLLVALVYVWRWRQGKLDDPGRLYPLLLAMPLAPHLANFTGWIATEMGRQPWIV
QGLLRTQDAVSNLPVQMVLLSLVAFWVVYLTLIGLDVFLLTRTARAGMHEPDVETPSLPAPHYLAEGGA

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=510, Percent_Identity=35.0980392156863, Blast_Score=268, Evalue=4e-73,
Organism=Escherichia coli, GI87081779, Length=499, Percent_Identity=32.2645290581162, Blast_Score=235, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52488; Mature: 52357

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEIFGFSALDLSRFQFATTSIFHYFFVPFTVGFALIIAILQTIAYRTGDPKMENLTRFF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GHLFFINFAVGVVTGIVQEFQFGMNWQGFSNFVGNIFGVPLALEVLMAFFLESTFLGLWW
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEE
FGKGKIPAWLSLASIWIVALGTTVSAFWIIIANAWMQHPVGFEIKNGRAVMTDAWAIVTN
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECEEEEEC
PKGLEWFAHIWAGSLTVGAFFVLAVSAYHLRRRHNVEAFRVSFRVALLTALIGSAGVIAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEE
GHTQGQSAVRDQPMKYAAFSALWETPAGNQMPESLVALPSNTLRENRFEITVPYLGSFLA
CCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHCCCCEEEEHHHHHHHHH
FNNFTGKAKGLNELQAEYEARYGPGNYIPFVWPVYWAFRVMVGLGFLMLLVALVYVWRWR
HCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QGKLDDPGRLYPLLLAMPLAPHLANFTGWIATEMGRQPWIVQGLLRTQDAVSNLPVQMVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
LSLVAFWVVYLTLIGLDVFLLTRTARAGMHEPDVETPSLPAPHYLAEGGA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCC
>Mature Secondary Structure 
TEIFGFSALDLSRFQFATTSIFHYFFVPFTVGFALIIAILQTIAYRTGDPKMENLTRFF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GHLFFINFAVGVVTGIVQEFQFGMNWQGFSNFVGNIFGVPLALEVLMAFFLESTFLGLWW
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEE
FGKGKIPAWLSLASIWIVALGTTVSAFWIIIANAWMQHPVGFEIKNGRAVMTDAWAIVTN
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECEEEEEC
PKGLEWFAHIWAGSLTVGAFFVLAVSAYHLRRRHNVEAFRVSFRVALLTALIGSAGVIAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEE
GHTQGQSAVRDQPMKYAAFSALWETPAGNQMPESLVALPSNTLRENRFEITVPYLGSFLA
CCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHCCCCEEEEHHHHHHHHH
FNNFTGKAKGLNELQAEYEARYGPGNYIPFVWPVYWAFRVMVGLGFLMLLVALVYVWRWR
HCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QGKLDDPGRLYPLLLAMPLAPHLANFTGWIATEMGRQPWIVQGLLRTQDAVSNLPVQMVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
LSLVAFWVVYLTLIGLDVFLLTRTARAGMHEPDVETPSLPAPHYLAEGGA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]