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The map label for this gene is cydB [H]

Identifier: 94972171

GI number: 94972171

Start: 324559

End: 325656

Strand: Direct

Name: cydB [H]

Synonym: Dgeo_2704

Alternate gene names: 94972171

Gene position: 324559-325656 (Clockwise)

Preceding gene: 94972172

Following gene: 94972167

Centisome position: 56.53

GC content: 66.03

Gene sequence:

>1098_bases
ATGGACCTGCCGACCCTGTGGTTTGCCCTCACGGGCCTGATTTTCACGGTCTACTTCTTCCTCGACGGTTTTGATTTCGG
GGTGGGGGTCTTGCAGCCCTTCCTCGCCCGCAACGAGGCGCAGCGTCGGGCGCTCATCGGCACGGTTGGTCCCTTCTGGG
CGGCAAACGAAGTTTGGGTGATTCTGGCCGCCGGGGTGATCTTCGCGGCCTTTCCGGTGTGGTACGGGGCGCTGATGACC
GGGCTGTATCCCCTCTTCGCGCTCATCCTGCTCGCGCTGATCGGGCGCGGGGTGGCCTTCGAGTACCGCGCCGAGGTGGA
CCACGTGCGCTGGCGGGTGTTCTGGGACGTGACGAGCTTTATCACGAACCTGCTGCCCGCCTTCCTGTGGGGCGTCATTA
TGGCGAACATGGTGCGCGGCCTGCCCATCGGGGAGGGAGCGCGGTTTCAGGGCAGCCCGCTCGATGCCTTTGACCTCTTC
AGCGTGCTGGGCGGCCTCTCGACCCTCAGCCTCTTCGTGCTGCACGGGGCCACCTACCTGCTGCTGAGGCTCCAGACAGG
CAGCACGCTGCATGCCCGCGCCCGCCGCGCCGCGCTGACCTGGGGGGCGGTGGCGACTGCCCTGGTGCTCGCCTTCGTCT
ACGTCGGCTTTATCCACACGGGCCTCTTCGCCACGTTGGGGCTCTCCGAGTGGCTCTTTCCCGCCGGCGCCGCCGTCAAC
CTGGCTCTGATCTGGCTGGCGCTGACCCTGCGGCGCGACAGGCTGGCCTTTGCCGCCACGGGCCTCACCATCGTCTTTTC
GACCGCGACGATCTTCCTGAGCCTGTACCCGGCAGCTCTTCCCTCGACGCTGGGGGAGGGGTACACCCTGACCGTGCAGG
CGGCGGCCTCCGAGCCGTACACGCTGCGGCTGCTCTCCTGGGTGAGCCTCGCTTTTTTGCCGCTCATCATCGGCTATCAG
GCCTGGAACTACTACGTGTTCCGCCAGCGGGTGCAGGAGCGGGACGAGCAGATTCCGGGTGGAGGGTCGGGGGTAAGAGG
CTCTCTGCTGGGCAACCTCGTTGAGGTCAGAAGTCATTCGGAAAATGATCACGGTTGA

Upstream 100 bases:

>100_bases
TGTTCCTCCTCACCCGCACCGCCCGTGCCGGGATGCACGAGCCGGATGTGGAGACGCCCTCGCTGCCCGCCCCGCACTAC
CTCGCGGAAGGAGGGGCCTG

Downstream 100 bases:

>100_bases
GGAGCGAGGTTGGTTAAGCAGCCCGGCCAAACGCGGCCAGATAGAAGGATGAGAAAAGCGGCCTCTTTGGAGTGGAAGCC
TCCAAACTTCACGAGGCGGC

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MDLPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVILAAGVIFAAFPVWYGALMT
GLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFITNLLPAFLWGVIMANMVRGLPIGEGARFQGSPLDAFDLF
SVLGGLSTLSLFVLHGATYLLLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSEWLFPAGAAVN
LALIWLALTLRRDRLAFAATGLTIVFSTATIFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQ
AWNYYVFRQRVQERDEQIPGGGSGVRGSLLGNLVEVRSHSENDHG

Sequences:

>Translated_365_residues
MDLPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVILAAGVIFAAFPVWYGALMT
GLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFITNLLPAFLWGVIMANMVRGLPIGEGARFQGSPLDAFDLF
SVLGGLSTLSLFVLHGATYLLLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSEWLFPAGAAVN
LALIWLALTLRRDRLAFAATGLTIVFSTATIFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQ
AWNYYVFRQRVQERDEQIPGGGSGVRGSLLGNLVEVRSHSENDHG
>Mature_365_residues
MDLPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVILAAGVIFAAFPVWYGALMT
GLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFITNLLPAFLWGVIMANMVRGLPIGEGARFQGSPLDAFDLF
SVLGGLSTLSLFVLHGATYLLLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSEWLFPAGAAVN
LALIWLALTLRRDRLAFAATGLTIVFSTATIFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQ
AWNYYVFRQRVQERDEQIPGGGSGVRGSLLGNLVEVRSHSENDHG

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=374, Percent_Identity=30.4812834224599, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1787213, Length=371, Percent_Identity=28.8409703504043, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 39975; Mature: 39975

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWV
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHH
ILAAGVIFAAFPVWYGALMTGLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCHHHHHHHHHHHHHHH
ITNLLPAFLWGVIMANMVRGLPIGEGARFQGSPLDAFDLFSVLGGLSTLSLFVLHGATYL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHE
LLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSEWLFPAGAAVN
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHH
LALIWLALTLRRDRLAFAATGLTIVFSTATIFLSLYPAALPSTLGEGYTLTVQAAASEPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH
TLRLLSWVSLAFLPLIIGYQAWNYYVFRQRVQERDEQIPGGGSGVRGSLLGNLVEVRSHS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
ENDHG
CCCCC
>Mature Secondary Structure
MDLPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWV
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHH
ILAAGVIFAAFPVWYGALMTGLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCHHHHHHHHHHHHHHH
ITNLLPAFLWGVIMANMVRGLPIGEGARFQGSPLDAFDLFSVLGGLSTLSLFVLHGATYL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHE
LLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSEWLFPAGAAVN
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHH
LALIWLALTLRRDRLAFAATGLTIVFSTATIFLSLYPAALPSTLGEGYTLTVQAAASEPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH
TLRLLSWVSLAFLPLIIGYQAWNYYVFRQRVQERDEQIPGGGSGVRGSLLGNLVEVRSHS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
ENDHG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]