| Definition | Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence. |
|---|---|
| Accession | NC_008010 |
| Length | 574,127 |
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The map label for this gene is xylA [H]
Identifier: 94972157
GI number: 94972157
Start: 340057
End: 342174
Strand: Direct
Name: xylA [H]
Synonym: Dgeo_2690
Alternate gene names: 94972157
Gene position: 340057-342174 (Clockwise)
Preceding gene: 94972158
Following gene: 94972156
Centisome position: 59.23
GC content: 64.07
Gene sequence:
>2118_bases ATGACCACCGCTTATCTCAGTCACCATGCCCCCTGGGGCGCCTACGCTTCTTTTATTCTCGGAGAGTTCGGAAAGGGCGG CGGGTTCGCCCTCTCAGATGTGCATTCGCCCCATCGCAACGTCTACGTCGCCTACCGGGTCAAGGGCGGTGCGGTCCACC TCCTGCCGTTCCTGAGTGCCCCGCTGGGCCTCGGGGAACTCGCCTACCAGGCGAACGCAGATAGGAAGCGGCGTGCCGCG CCGGTTGTGTGGACCCTTCCCGGCGAGGAACTCGAACGGCGGCTCGGCTGGGCGTCGGATGAATGGCGGCACGGACCCTT CCAGTTCCGGTTGCTCAGCCCCTTCGGTGAGGTGCCCTTCCCCGGCGTGGACGACGAAGCGTTGCGGCGGGCCGTGTGTC CGGTGATACTGGCTGAACTAGCGCTCGACAACCGTGAGTCGGACGTTCCCGCCGAACTGCTGTTCGCACTGGAGGGTATC AACCGCCCGCTGTCAGACGCCACCGGCGGCGCTCTGATTGGGGCGGCTTGCGGACGGGCATGGGGCGTCGCTGCCCTCCC GAGTCCCGGCGTGGAGGAGATCCAGGACTTCGACGTAATTGGGGCTGCCTTCGGTGAGCGCCGTCCCCGGGTGCGGCGGC TAGGAAACGCGGGCGGAGTGATGCTGACCGTTCCCGCGGGAGAGATCGGACGGCTGGTACTGACTTTGGGCACCTATCAG GGAGGGACCGTCACCAGCGGGCTGGACACCAGCTTCTACTACACGCAGTTCTTCTCGGGTCTGGAGGAGGTGCTGGCCTT TGGTCTCGCTCAGGCTGGGCATTTTCAGGCGCTAGCCACTACACGAGATGAAGAACTGCTCCGGAGTGGGCTGAGCGAGG ACCGGCAGTTTCTACTCGCTCATGCCACCCATGGTTACCTCGCCAGCACACAGCTCCTCGTGCGGGAGGACGGGCAGCCC CTCTGGGTGGTGAACGAGGGCGAATACCGCATGATCAACACCCTTGACCTGACCGTCGACCAGCTCTTCTGGGAGCTGCG CTACCACCCCTGGACCACTAGGAACGTCCTCGACCTTTTTGCAGAACGGTACGCGTTCACCGACGAGGTGAAATGGGGTG AGGAGCGGCTACCCGGCGGCCTGAGCTTCACACACGACATGGGCGTATCAAACGTCTTCACGCCGCCCGGCATCTCCTCG TACGAGACCGAGAACCTAGACGGGTGCTTCTCGCACATGACCTTTGAGCAACTCACCAACTGGACGCTAAGTGCCATCCT GTACGGCTTGATCGCCGACCGCCCCTGGCTTTCTCGGCAGGGTGAGCGTCTGGAAGCCTGCCTCGCCTCGCTGCTCGCGC GCGACCTCGACGGGGACGGCATCATGGATGTGGATAGTGCCCGTACGGGAGACGGGGCGGAGATCACCACCTACGATAGC CTGGATGCAAGCCTCGGACAGGCCCGGGGGAACCTATATCTTGCCGTCAAGACGTGGGCTAGCCTGGTCTGCCTGGAGCA CGCGCTGACCATCCTGGGCCGGGACGGCGAACGTGCCGGGAGGCAGGCACAACGGGCTGCTCGGCGTATCACAGACGCCT TCGAACCAGCACGAGGATACATCCCGGCTTTGCTATCGGAGGAAAGCGACGCGTGCATCATCCCGGCCATCGAGGCGCTT GCTTACCCCTTCCTGCTGGGCTTGCGGGACACGGTGACCGAACAGGGGCCCTATGGGGCGCTGGTTACGGCGTTGCGGCG GCATCTTACCACCGCGTTGCAACCAGGCGTCTGTCTGGACGCTACATCGGGGGGCTGGAAGCTCTCCAGCACAAGTATCA ACACGTGGCTTTCCAAGATCTTCCTGTGTCAGTTTGTGGCGGAGAAAGTCTTCGGGGTGCACTCAGACCCGAGTTGGGAC AAGGTGCATGTCCGCTGGCAACAGGTAGGATCTGCCCCCCACGGCCCAACCGATCAGGTCCGTTCCACGGACGGGGAAGC CTTGGGCAGCCGTCTCTATCCCCGCCTCGTGACGAACGTGCTGTGGCTGCCCCAGCCGTGGGCGGGGCAGGGGGTTTTCG ACTCACCCTGCAAGGCACGTCCTGATGGTTGGCGGTGA
Upstream 100 bases:
>100_bases CAGAGCGTTCCTGATCTTCCCAGAGCGATCCTGCCCACGCGCCTCGTCGACTGAACAGCACGGCCTTCCCTATCTGCGCC ATGCCGCCGGAAAGGACCCC
Downstream 100 bases:
>100_bases CCGCCTGAATGCCGGTATGCCCACCGGAGGAACGAATGACCATTTACCGCAAACTGGGCCGCAGCGGGTTGCATCTTTTT CCCATCGGACTGGGCAGCAT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]
Number of amino acids: Translated: 705; Mature: 704
Protein sequence:
>705_residues MTTAYLSHHAPWGAYASFILGEFGKGGGFALSDVHSPHRNVYVAYRVKGGAVHLLPFLSAPLGLGELAYQANADRKRRAA PVVWTLPGEELERRLGWASDEWRHGPFQFRLLSPFGEVPFPGVDDEALRRAVCPVILAELALDNRESDVPAELLFALEGI NRPLSDATGGALIGAACGRAWGVAALPSPGVEEIQDFDVIGAAFGERRPRVRRLGNAGGVMLTVPAGEIGRLVLTLGTYQ GGTVTSGLDTSFYYTQFFSGLEEVLAFGLAQAGHFQALATTRDEELLRSGLSEDRQFLLAHATHGYLASTQLLVREDGQP LWVVNEGEYRMINTLDLTVDQLFWELRYHPWTTRNVLDLFAERYAFTDEVKWGEERLPGGLSFTHDMGVSNVFTPPGISS YETENLDGCFSHMTFEQLTNWTLSAILYGLIADRPWLSRQGERLEACLASLLARDLDGDGIMDVDSARTGDGAEITTYDS LDASLGQARGNLYLAVKTWASLVCLEHALTILGRDGERAGRQAQRAARRITDAFEPARGYIPALLSEESDACIIPAIEAL AYPFLLGLRDTVTEQGPYGALVTALRRHLTTALQPGVCLDATSGGWKLSSTSINTWLSKIFLCQFVAEKVFGVHSDPSWD KVHVRWQQVGSAPHGPTDQVRSTDGEALGSRLYPRLVTNVLWLPQPWAGQGVFDSPCKARPDGWR
Sequences:
>Translated_705_residues MTTAYLSHHAPWGAYASFILGEFGKGGGFALSDVHSPHRNVYVAYRVKGGAVHLLPFLSAPLGLGELAYQANADRKRRAA PVVWTLPGEELERRLGWASDEWRHGPFQFRLLSPFGEVPFPGVDDEALRRAVCPVILAELALDNRESDVPAELLFALEGI NRPLSDATGGALIGAACGRAWGVAALPSPGVEEIQDFDVIGAAFGERRPRVRRLGNAGGVMLTVPAGEIGRLVLTLGTYQ GGTVTSGLDTSFYYTQFFSGLEEVLAFGLAQAGHFQALATTRDEELLRSGLSEDRQFLLAHATHGYLASTQLLVREDGQP LWVVNEGEYRMINTLDLTVDQLFWELRYHPWTTRNVLDLFAERYAFTDEVKWGEERLPGGLSFTHDMGVSNVFTPPGISS YETENLDGCFSHMTFEQLTNWTLSAILYGLIADRPWLSRQGERLEACLASLLARDLDGDGIMDVDSARTGDGAEITTYDS LDASLGQARGNLYLAVKTWASLVCLEHALTILGRDGERAGRQAQRAARRITDAFEPARGYIPALLSEESDACIIPAIEAL AYPFLLGLRDTVTEQGPYGALVTALRRHLTTALQPGVCLDATSGGWKLSSTSINTWLSKIFLCQFVAEKVFGVHSDPSWD KVHVRWQQVGSAPHGPTDQVRSTDGEALGSRLYPRLVTNVLWLPQPWAGQGVFDSPCKARPDGWR >Mature_704_residues TTAYLSHHAPWGAYASFILGEFGKGGGFALSDVHSPHRNVYVAYRVKGGAVHLLPFLSAPLGLGELAYQANADRKRRAAP VVWTLPGEELERRLGWASDEWRHGPFQFRLLSPFGEVPFPGVDDEALRRAVCPVILAELALDNRESDVPAELLFALEGIN RPLSDATGGALIGAACGRAWGVAALPSPGVEEIQDFDVIGAAFGERRPRVRRLGNAGGVMLTVPAGEIGRLVLTLGTYQG GTVTSGLDTSFYYTQFFSGLEEVLAFGLAQAGHFQALATTRDEELLRSGLSEDRQFLLAHATHGYLASTQLLVREDGQPL WVVNEGEYRMINTLDLTVDQLFWELRYHPWTTRNVLDLFAERYAFTDEVKWGEERLPGGLSFTHDMGVSNVFTPPGISSY ETENLDGCFSHMTFEQLTNWTLSAILYGLIADRPWLSRQGERLEACLASLLARDLDGDGIMDVDSARTGDGAEITTYDSL DASLGQARGNLYLAVKTWASLVCLEHALTILGRDGERAGRQAQRAARRITDAFEPARGYIPALLSEESDACIIPAIEALA YPFLLGLRDTVTEQGPYGALVTALRRHLTTALQPGVCLDATSGGWKLSSTSINTWLSKIFLCQFVAEKVFGVHSDPSWDK VHVRWQQVGSAPHGPTDQVRSTDGEALGSRLYPRLVTNVLWLPQPWAGQGVFDSPCKARPDGWR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 52 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR000852 [H]
Pfam domain/function: PF03512 Glyco_hydro_52 [H]
EC number: =3.2.1.37 [H]
Molecular weight: Translated: 77203; Mature: 77072
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAYLSHHAPWGAYASFILGEFGKGGGFALSDVHSPHRNVYVAYRVKGGAVHLLPFLSA CCCEECCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCCEEEEHHHHCC PLGLGELAYQANADRKRRAAPVVWTLPGEELERRLGWASDEWRHGPFQFRLLSPFGEVPF CCCCHHHHHHCCCCHHHCCCCEEEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC PGVDDEALRRAVCPVILAELALDNRESDVPAELLFALEGINRPLSDATGGALIGAACGRA CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHH WGVAALPSPGVEEIQDFDVIGAAFGERRPRVRRLGNAGGVMLTVPAGEIGRLVLTLGTYQ CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCCEEEEEEECCC GGTVTSGLDTSFYYTQFFSGLEEVLAFGLAQAGHFQALATTRDEELLRSGLSEDRQFLLA CCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCHHHHEEHH HATHGYLASTQLLVREDGQPLWVVNEGEYRMINTLDLTVDQLFWELRYHPWTTRNVLDLF HCCCCHHHHEEEEEEECCCEEEEEECCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHH AERYAFTDEVKWGEERLPGGLSFTHDMGVSNVFTPPGISSYETENLDGCFSHMTFEQLTN HHHHCCCCCCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH WTLSAILYGLIADRPWLSRQGERLEACLASLLARDLDGDGIMDVDSARTGDGAEITTYDS HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEECC LDASLGQARGNLYLAVKTWASLVCLEHALTILGRDGERAGRQAQRAARRITDAFEPARGY HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC IPALLSEESDACIIPAIEALAYPFLLGLRDTVTEQGPYGALVTALRRHLTTALQPGVCLD HHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE ATSGGWKLSSTSINTWLSKIFLCQFVAEKVFGVHSDPSWDKVHVRWQQVGSAPHGPTDQV CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHCCCCCCCCHHH RSTDGEALGSRLYPRLVTNVLWLPQPWAGQGVFDSPCKARPDGWR HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TTAYLSHHAPWGAYASFILGEFGKGGGFALSDVHSPHRNVYVAYRVKGGAVHLLPFLSA CCEECCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCCEEEEHHHHCC PLGLGELAYQANADRKRRAAPVVWTLPGEELERRLGWASDEWRHGPFQFRLLSPFGEVPF CCCCHHHHHHCCCCHHHCCCCEEEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC PGVDDEALRRAVCPVILAELALDNRESDVPAELLFALEGINRPLSDATGGALIGAACGRA CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHH WGVAALPSPGVEEIQDFDVIGAAFGERRPRVRRLGNAGGVMLTVPAGEIGRLVLTLGTYQ CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCCEEEEEEECCC GGTVTSGLDTSFYYTQFFSGLEEVLAFGLAQAGHFQALATTRDEELLRSGLSEDRQFLLA CCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCHHHHEEHH HATHGYLASTQLLVREDGQPLWVVNEGEYRMINTLDLTVDQLFWELRYHPWTTRNVLDLF HCCCCHHHHEEEEEEECCCEEEEEECCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHH AERYAFTDEVKWGEERLPGGLSFTHDMGVSNVFTPPGISSYETENLDGCFSHMTFEQLTN HHHHCCCCCCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH WTLSAILYGLIADRPWLSRQGERLEACLASLLARDLDGDGIMDVDSARTGDGAEITTYDS HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEECC LDASLGQARGNLYLAVKTWASLVCLEHALTILGRDGERAGRQAQRAARRITDAFEPARGY HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC IPALLSEESDACIIPAIEALAYPFLLGLRDTVTEQGPYGALVTALRRHLTTALQPGVCLD HHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE ATSGGWKLSSTSINTWLSKIFLCQFVAEKVFGVHSDPSWDKVHVRWQQVGSAPHGPTDQV CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHCCCCCCCCHHH RSTDGEALGSRLYPRLVTNVLWLPQPWAGQGVFDSPCKARPDGWR HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8074507 [H]