| Definition | Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence. |
|---|---|
| Accession | NC_008010 |
| Length | 574,127 |
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The map label for this gene is 94972042
Identifier: 94972042
GI number: 94972042
Start: 478884
End: 479423
Strand: Direct
Name: 94972042
Synonym: Dgeo_2574
Alternate gene names: NA
Gene position: 478884-479423 (Clockwise)
Preceding gene: 94972045
Following gene: 94972041
Centisome position: 83.41
GC content: 67.59
Gene sequence:
>540_bases ATGGGCAGGACCATGCCTTCTCCGAAGTGCCCCATCCGAAAAGAACCACAAGGTTGCGGCCAGTTGGTCGGCCAACGAGG ATTCGAACCGCGCAGAGGAGGGACAGCGGTGACACAGCGCAGCGATCAGGCAGGTTTTGATGGGTATCCGCATGACACGT CCGAAGAGAATCAGCCGTGCGAGGGCTTGCAGGGCGACGCCCGCCTGCGGGAGGAGCTCACCCGGTGGCTGGCCGAGCGG GGTCAGCTGGACGGCACACATATTGACGTGCACGTCCAGGACGGGGGGGTGATCCTGCGGGGCGAGGTGCGGGACGCCTT TCAGAAGGACCTGGCCGAGGATCTGGTACGGGCGGCGCAGGGGGTCCGCGAGATCCGGAACGAACTGCGGGTGGGGCCCG AGGTGCCCCGCCCGGTCCTCCCGGCTAACGGAGGGAGCAGGGTGGTGGATGCGGGATACGACGGGGGCGGCATTGGGGGC GGACCTGGACCAGGGGCCCTACTGGACGAGGCGGCAGGGCAGGACAAGCACAGCGAGTGA
Upstream 100 bases:
>100_bases CAGTGAATTCGCGGAAGATTCCGGGAACCCCGACCAGGGAAAGTGGGAGCAAAAAAGTTGAGCCTTTTCAGCTTTGCGCG TGGGTTGCCCCGTTGCCGGG
Downstream 100 bases:
>100_bases CCGCCCCGAGCCAGCGAACGACCAGGATGCGCGGTGGCCTGTGAGGAGGGCGGGAAGTTCTCGTGCCGTGGGGCAGGCTG CGGAAACGGGAGGGTGCCAC
Product: transport-associated protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MGRTMPSPKCPIRKEPQGCGQLVGQRGFEPRRGGTAVTQRSDQAGFDGYPHDTSEENQPCEGLQGDARLREELTRWLAER GQLDGTHIDVHVQDGGVILRGEVRDAFQKDLAEDLVRAAQGVREIRNELRVGPEVPRPVLPANGGSRVVDAGYDGGGIGG GPGPGALLDEAAGQDKHSE
Sequences:
>Translated_179_residues MGRTMPSPKCPIRKEPQGCGQLVGQRGFEPRRGGTAVTQRSDQAGFDGYPHDTSEENQPCEGLQGDARLREELTRWLAER GQLDGTHIDVHVQDGGVILRGEVRDAFQKDLAEDLVRAAQGVREIRNELRVGPEVPRPVLPANGGSRVVDAGYDGGGIGG GPGPGALLDEAAGQDKHSE >Mature_178_residues GRTMPSPKCPIRKEPQGCGQLVGQRGFEPRRGGTAVTQRSDQAGFDGYPHDTSEENQPCEGLQGDARLREELTRWLAERG QLDGTHIDVHVQDGGVILRGEVRDAFQKDLAEDLVRAAQGVREIRNELRVGPEVPRPVLPANGGSRVVDAGYDGGGIGGG PGPGALLDEAAGQDKHSE
Specific function: Unknown
COG id: COG2823
COG function: function code R; Predicted periplasmic or secreted lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19110; Mature: 18979
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS50914 BON
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRTMPSPKCPIRKEPQGCGQLVGQRGFEPRRGGTAVTQRSDQAGFDGYPHDTSEENQPC CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC EGLQGDARLREELTRWLAERGQLDGTHIDVHVQDGGVILRGEVRDAFQKDLAEDLVRAAQ CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHH GVREIRNELRVGPEVPRPVLPANGGSRVVDAGYDGGGIGGGPGPGALLDEAAGQDKHSE HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCC >Mature Secondary Structure GRTMPSPKCPIRKEPQGCGQLVGQRGFEPRRGGTAVTQRSDQAGFDGYPHDTSEENQPC CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC EGLQGDARLREELTRWLAERGQLDGTHIDVHVQDGGVILRGEVRDAFQKDLAEDLVRAAQ CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHH GVREIRNELRVGPEVPRPVLPANGGSRVVDAGYDGGGIGGGPGPGALLDEAAGQDKHSE HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA