| Definition | Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence. |
|---|---|
| Accession | NC_008010 |
| Length | 574,127 |
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The map label for this gene is mug [H]
Identifier: 94972036
GI number: 94972036
Start: 485135
End: 485668
Strand: Direct
Name: mug [H]
Synonym: Dgeo_2568
Alternate gene names: 94972036
Gene position: 485135-485668 (Clockwise)
Preceding gene: 94972037
Following gene: 94972034
Centisome position: 84.5
GC content: 70.79
Gene sequence:
>534_bases ATGACACGGGACACAGCGGGTGCCCCCGTGCTCCAGGACCTGGTGGCCGAAGGCGTGCAGGTGCTGTTCGTAGGCTTCAA CCCCAGCCCACGCTCGGTGCAGCAGGGGCACCACTACGCCGGGCGCGGCAACCAGTTCTGGCGGCTGCTGGCGGCTTCGG GCCTCACGCCCCGGCTGCTGCGGCCCGAGGAAGACCACCTGCTGCCCCGCTGGGGCCTGGGATCCACCAACCTGGTGGCG CGCCCGACCGTCAGCGCCGCCGAACTGAGCCGTTCGGAACTCCGCGCGGGTGTCCCGCACCTGCGCCGTCTCGTGGCGAG GTACCAGGTTCCCCTCGTCGCCTACACCGGGAAGGGGGTGTACCTCGCCGCGACGGGAAAACAGCAAGCCCACTGGGGCG CCCAGGAGGACAGCTTGATTGGGGGAGTGACGGACTTCGTGCTGCCGTCGCCGAGCGGTCTGGCGCGGCTGCCGTTCGCG GAGAAGCTCGGGTACTACCGTGCGCTGGCGGAACTGGCCCAGCAGCCAGGGTGA
Upstream 100 bases:
>100_bases GGGGTGGGTCCGGACCAGGCGCGCCGCCGAGCGGCCCGGCCAGGCCCGAGGCGCAGTGGGAAACGCCGGAGCCTTCTCCC CCGGCTGTCCGGGACCGGGG
Downstream 100 bases:
>100_bases CGACTGGGCCTTGGGACGACTGGGCCTTGGGGCGCGGGCGAGCCGGCCACCTGTGAACCACAGTTCACGCTGGATACACG GGACCCGGAACGACATGCTG
Product: uracil-DNA glycosylase superfamily protein
Products: NA
Alternate protein names: Double-strand-specific uracil glycosylase; Mismatch-specific uracil DNA-glycosylase; MUG [H]
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MTRDTAGAPVLQDLVAEGVQVLFVGFNPSPRSVQQGHHYAGRGNQFWRLLAASGLTPRLLRPEEDHLLPRWGLGSTNLVA RPTVSAAELSRSELRAGVPHLRRLVARYQVPLVAYTGKGVYLAATGKQQAHWGAQEDSLIGGVTDFVLPSPSGLARLPFA EKLGYYRALAELAQQPG
Sequences:
>Translated_177_residues MTRDTAGAPVLQDLVAEGVQVLFVGFNPSPRSVQQGHHYAGRGNQFWRLLAASGLTPRLLRPEEDHLLPRWGLGSTNLVA RPTVSAAELSRSELRAGVPHLRRLVARYQVPLVAYTGKGVYLAATGKQQAHWGAQEDSLIGGVTDFVLPSPSGLARLPFA EKLGYYRALAELAQQPG >Mature_176_residues TRDTAGAPVLQDLVAEGVQVLFVGFNPSPRSVQQGHHYAGRGNQFWRLLAASGLTPRLLRPEEDHLLPRWGLGSTNLVAR PTVSAAELSRSELRAGVPHLRRLVARYQVPLVAYTGKGVYLAATGKQQAHWGAQEDSLIGGVTDFVLPSPSGLARLPFAE KLGYYRALAELAQQPG
Specific function: Excises ethenocytosine and uracil, which can arise by alkylation or deamination of cytosine, respectively, from the corresponding mispairs with guanine in ds-DNA. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone o
COG id: COG3663
COG function: function code L; G:T/U mismatch-specific DNA glycosylase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TDG/mug DNA glycosylase family [H]
Homologues:
Organism=Homo sapiens, GI59853162, Length=176, Percent_Identity=32.3863636363636, Blast_Score=92, Evalue=3e-19, Organism=Escherichia coli, GI1789449, Length=162, Percent_Identity=37.037037037037, Blast_Score=105, Evalue=2e-24, Organism=Drosophila melanogaster, GI21356805, Length=175, Percent_Identity=34.8571428571429, Blast_Score=106, Evalue=9e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015637 - InterPro: IPR005122 [H]
Pfam domain/function: PF03167 UDG [H]
EC number: =3.2.2.28 [H]
Molecular weight: Translated: 19144; Mature: 19013
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRDTAGAPVLQDLVAEGVQVLFVGFNPSPRSVQQGHHYAGRGNQFWRLLAASGLTPRLL CCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCC RPEEDHLLPRWGLGSTNLVARPTVSAAELSRSELRAGVPHLRRLVARYQVPLVAYTGKGV CCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCE YLAATGKQQAHWGAQEDSLIGGVTDFVLPSPSGLARLPFAEKLGYYRALAELAQQPG EEEECCCCHHCCCCCCCCHHCCHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TRDTAGAPVLQDLVAEGVQVLFVGFNPSPRSVQQGHHYAGRGNQFWRLLAASGLTPRLL CCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCC RPEEDHLLPRWGLGSTNLVARPTVSAAELSRSELRAGVPHLRRLVARYQVPLVAYTGKGV CCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCE YLAATGKQQAHWGAQEDSLIGGVTDFVLPSPSGLARLPFAEKLGYYRALAELAQQPG EEEECCCCHHCCCCCCCCHHCCHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA