Click here to switch to the map view.

The map label for this gene is nifC [H]

Identifier: 94971966

GI number: 94971966

Start: 553585

End: 554319

Strand: Direct

Name: nifC [H]

Synonym: Dgeo_2498

Alternate gene names: 94971966

Gene position: 553585-554319 (Clockwise)

Preceding gene: 94971967

Following gene: 94971963

Centisome position: 96.42

GC content: 67.07

Gene sequence:

>735_bases
ATGGCGGCCTTTCTGTTGCTGCCGGTGCTGGTTCTGTTGGCGCAGGGAGTCTACGCGGGCTTCCCCACCACCCTGCGCGC
TCCAGCAGTGCTGGATGCTCTGCGGGTCAGCGCAGTGACAACGGGCAGCGCTCTGGCCGTCACACTGTTGCTGGGAACAC
CGGTCGCGTACCTGCTGGCACGGCGGCGCTTTGTGGGGCGCAAGCTGCTGGACGCGCTGTTGGACCTGCCGCTGGTCCTG
CCGCCCGTGGTGGCGGGGGTGGCACTGCTGCTGACCTTTGGGCGCGGCGGCCTGTTGGGCCGCCCACTGGAGCTGGCCGG
AATTGAGCTGGCCTTTACACCCACCGCCGTCGTGCTGGCGCAGGTTTTTACCAGTGCGCCCTTCTACATGCGGGCGGCCA
AGGCCGGATTTCTCGCCTTTAACCCTGACGTCGAAGCGGCCGCGCGGGTCGACGGGGCAGGATCTTGGGAAACGTTCTGG
CACGTCACGCTGCCGCTGGCCCTGCCCTTCCTGCTCGAAGGTGCGGTGCTGGCATGGGCCCGCTCGCTAGGCGAGTTCGG
CGCCACGCTGCTGTTCGCCGGGAGCCTTCAGGGCCAGACCCGCACGGTGCCCCTGGCCATCTACAGCGCGATGGAAAGTG
ACCTCGCTCCCGCACTGGTGCTGAGTGCGGTCATGGTGGTGTTTGCCTTCGCCGTGCTGTTCACGCTGCGCATGCTCGCA
GGAAAACATTCCTGA

Upstream 100 bases:

>100_bases
GCTCTCCAGAGGGACAGCGAATTCTGCGCAAGTGGGGGTTCCTGTCCGCGCCATAAGCCCGGCCCGTTCTCAACCGGTTC
CGGTCGCGCTCAGCCTGCTG

Downstream 100 bases:

>100_bases
AGCCGGCTCCCACCGCGCAGGGATTTCGCGGCTGACGGCAGGATCGCGCAGCAGAAGCCGCACAGGCTCTGTGGAACCTG
TGCGGCGAGGTCCTGTATTC

Product: NifC-like ABC-type porter

Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MAAFLLLPVLVLLAQGVYAGFPTTLRAPAVLDALRVSAVTTGSALAVTLLLGTPVAYLLARRRFVGRKLLDALLDLPLVL
PPVVAGVALLLTFGRGGLLGRPLELAGIELAFTPTAVVLAQVFTSAPFYMRAAKAGFLAFNPDVEAAARVDGAGSWETFW
HVTLPLALPFLLEGAVLAWARSLGEFGATLLFAGSLQGQTRTVPLAIYSAMESDLAPALVLSAVMVVFAFAVLFTLRMLA
GKHS

Sequences:

>Translated_244_residues
MAAFLLLPVLVLLAQGVYAGFPTTLRAPAVLDALRVSAVTTGSALAVTLLLGTPVAYLLARRRFVGRKLLDALLDLPLVL
PPVVAGVALLLTFGRGGLLGRPLELAGIELAFTPTAVVLAQVFTSAPFYMRAAKAGFLAFNPDVEAAARVDGAGSWETFW
HVTLPLALPFLLEGAVLAWARSLGEFGATLLFAGSLQGQTRTVPLAIYSAMESDLAPALVLSAVMVVFAFAVLFTLRMLA
GKHS
>Mature_243_residues
AAFLLLPVLVLLAQGVYAGFPTTLRAPAVLDALRVSAVTTGSALAVTLLLGTPVAYLLARRRFVGRKLLDALLDLPLVLP
PVVAGVALLLTFGRGGLLGRPLELAGIELAFTPTAVVLAQVFTSAPFYMRAAKAGFLAFNPDVEAAARVDGAGSWETFWH
VTLPLALPFLLEGAVLAWARSLGEFGATLLFAGSLQGQTRTVPLAIYSAMESDLAPALVLSAVMVVFAFAVLFTLRMLAG
KHS

Specific function: May be involved in molybdenum transport [H]

COG id: COG0555

COG function: function code O; ABC-type sulfate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788764, Length=206, Percent_Identity=35.9223300970874, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082099, Length=246, Percent_Identity=33.739837398374, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786980, Length=186, Percent_Identity=45.1612903225806, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515
- InterPro:   IPR011867
- InterPro:   IPR006469 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25571; Mature: 25440

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAFLLLPVLVLLAQGVYAGFPTTLRAPAVLDALRVSAVTTGSALAVTLLLGTPVAYLLA
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHH
RRRFVGRKLLDALLDLPLVLPPVVAGVALLLTFGRGGLLGRPLELAGIELAFTPTAVVLA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCEEEEECHHHHHHH
QVFTSAPFYMRAAKAGFLAFNPDVEAAARVDGAGSWETFWHVTLPLALPFLLEGAVLAWA
HHHHCCCHHHHHHHCCCEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RSLGEFGATLLFAGSLQGQTRTVPLAIYSAMESDLAPALVLSAVMVVFAFAVLFTLRMLA
HHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
GKHS
CCCC
>Mature Secondary Structure 
AAFLLLPVLVLLAQGVYAGFPTTLRAPAVLDALRVSAVTTGSALAVTLLLGTPVAYLLA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHH
RRRFVGRKLLDALLDLPLVLPPVVAGVALLLTFGRGGLLGRPLELAGIELAFTPTAVVLA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCEEEEECHHHHHHH
QVFTSAPFYMRAAKAGFLAFNPDVEAAARVDGAGSWETFWHVTLPLALPFLLEGAVLAWA
HHHHCCCHHHHHHHCCCEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RSLGEFGATLLFAGSLQGQTRTVPLAIYSAMESDLAPALVLSAVMVVFAFAVLFTLRMLA
HHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
GKHS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]

Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2194453 [H]