| Definition | Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence. |
|---|---|
| Accession | NC_008010 |
| Length | 574,127 |
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The map label for this gene is 94971939
Identifier: 94971939
GI number: 94971939
Start: 4939
End: 6141
Strand: Direct
Name: 94971939
Synonym: Dgeo_2471
Alternate gene names: NA
Gene position: 4939-6141 (Clockwise)
Preceding gene: 94971940
Following gene: 94971938
Centisome position: 0.86
GC content: 62.76
Gene sequence:
>1203_bases ATGCAGCTTCCCGGTGGGGTGCAGCTCACCTACTGCACCAATCTTCATGCTGCCTCCAGCCTCGACGAGGTGCGTGCCAA TTTGGACCGCTACGCGGTGCCACTCAAGGCCCGCCTCTCGCCGAATGCGCCCTTCGGCATCGGCCTGCGCCTTTCCGGCC AGGAAAGTGCAGAACTGCTGGAGGGGCAGGCACTCGCAGCCTTCAAAGCGTTTCTGGACGAACGGGGCCTCTACGTCTTC ACCCTCAACGGCTTTCCCTATGGCCCCTTTCACGGTCAGCCGGTCAAGACCCAGGTTCACGCGCCCGACTGGCGGGACGC AGAACGGGTCGCCTATACCCAGCGCCTGGCCGAGATTCTGGCCTTTTTGCTGCCAGAAGGCGGTGAAGGCGGCATTTCGA CGAGTCCGCTCTCGTACCGGGGATGGGTAGAGGCTGACAGCCGCTCAGCCTGGATCCAGATGACCGGGAACCTGGTGCGG GTGGTGGAGACCCTGATTCGCCTGCGTCAGCGGTGGGGCCGCTTCATTCACCTCGACCTCGAACCCGAACCGGACGGACT GCTGCAATGCAGTGATGATCTGGCCCGGTTTTTCCGGGAACATCTGCTGGGAGGCGGCGCGCGTGATCTTGCGGCTCGCC TGGGAATCGACGTAGAGCAGGCCCGCGCGTATCTGAGAGACCACGTACAGGTCTGTTTTGACACCTGCCATGTGGCGGTG ATGTACGAAGACCCGGCCCAGGCACTGCAAACCTACGAACAGGTGGGCCTGCGCATCGGCAAGGTGCAGATCAGCTCGGC CCTGCGCTTGCCGCTGCCTCCCGATCCTGAAGCGCGGTTGGACGGAGCGCGAGCGCTGGTGCCTTTCGTGGAGGACACCT ACCTGCATCAGGTGATTGGGCGGAGCAGGGACGGAAAGATCGTCCAGTACCCCGACCTGCCACCCGCGTTGGCCCACGTG CGCGACCCACAGGTGACAGAGTGGCGGATCCACTTCCATATTCCGGTCTTCCTGGAACGTGCCGGACTCTTTGCCTCAAC CCAACCGGAGATTGTCAAAACGCTGGCGCTGCTGCGCGAGAAGGGCTTTACCCGGCATCTGGAAATCGAAACCTATACCT GGGACGTGCTGCCGGAAGCGCTGAAGTTGCCGCTGCTGTGCTCCATCGAGCGGGAATACCGTTGGGTGATGGATGTCCTC TAG
Upstream 100 bases:
>100_bases TGATCGAGCGGATCGTGCTCGACAATCCGGGGCGGTTCTTGAGTCAGTCGCCCAAGTTCAGGCCGGTGCGGAGCGGGCGC CGGGCAGTGGCGGCGGACTG
Downstream 100 bases:
>100_bases CACATTGCGTCCCGCTTGGCGCCAGCGACTGTACGGGCACCTGTCACTGGCTCGCGTCTCCAACAGTCCCACGGTGGTCT CTAACGTGCTTGCGGGTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MQLPGGVQLTYCTNLHAASSLDEVRANLDRYAVPLKARLSPNAPFGIGLRLSGQESAELLEGQALAAFKAFLDERGLYVF TLNGFPYGPFHGQPVKTQVHAPDWRDAERVAYTQRLAEILAFLLPEGGEGGISTSPLSYRGWVEADSRSAWIQMTGNLVR VVETLIRLRQRWGRFIHLDLEPEPDGLLQCSDDLARFFREHLLGGGARDLAARLGIDVEQARAYLRDHVQVCFDTCHVAV MYEDPAQALQTYEQVGLRIGKVQISSALRLPLPPDPEARLDGARALVPFVEDTYLHQVIGRSRDGKIVQYPDLPPALAHV RDPQVTEWRIHFHIPVFLERAGLFASTQPEIVKTLALLREKGFTRHLEIETYTWDVLPEALKLPLLCSIEREYRWVMDVL
Sequences:
>Translated_400_residues MQLPGGVQLTYCTNLHAASSLDEVRANLDRYAVPLKARLSPNAPFGIGLRLSGQESAELLEGQALAAFKAFLDERGLYVF TLNGFPYGPFHGQPVKTQVHAPDWRDAERVAYTQRLAEILAFLLPEGGEGGISTSPLSYRGWVEADSRSAWIQMTGNLVR VVETLIRLRQRWGRFIHLDLEPEPDGLLQCSDDLARFFREHLLGGGARDLAARLGIDVEQARAYLRDHVQVCFDTCHVAV MYEDPAQALQTYEQVGLRIGKVQISSALRLPLPPDPEARLDGARALVPFVEDTYLHQVIGRSRDGKIVQYPDLPPALAHV RDPQVTEWRIHFHIPVFLERAGLFASTQPEIVKTLALLREKGFTRHLEIETYTWDVLPEALKLPLLCSIEREYRWVMDVL >Mature_400_residues MQLPGGVQLTYCTNLHAASSLDEVRANLDRYAVPLKARLSPNAPFGIGLRLSGQESAELLEGQALAAFKAFLDERGLYVF TLNGFPYGPFHGQPVKTQVHAPDWRDAERVAYTQRLAEILAFLLPEGGEGGISTSPLSYRGWVEADSRSAWIQMTGNLVR VVETLIRLRQRWGRFIHLDLEPEPDGLLQCSDDLARFFREHLLGGGARDLAARLGIDVEQARAYLRDHVQVCFDTCHVAV MYEDPAQALQTYEQVGLRIGKVQISSALRLPLPPDPEARLDGARALVPFVEDTYLHQVIGRSRDGKIVQYPDLPPALAHV RDPQVTEWRIHFHIPVFLERAGLFASTQPEIVKTLALLREKGFTRHLEIETYTWDVLPEALKLPLLCSIEREYRWVMDVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45046; Mature: 45046
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLPGGVQLTYCTNLHAASSLDEVRANLDRYAVPLKARLSPNAPFGIGLRLSGQESAELL CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCHHHHHH EGQALAAFKAFLDERGLYVFTLNGFPYGPFHGQPVKTQVHAPDWRDAERVAYTQRLAEIL CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH AFLLPEGGEGGISTSPLSYRGWVEADSRSAWIQMTGNLVRVVETLIRLRQRWGRFIHLDL HHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEEC EPEPDGLLQCSDDLARFFREHLLGGGARDLAARLGIDVEQARAYLRDHVQVCFDTCHVAV CCCCCCCEECCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEE MYEDPAQALQTYEQVGLRIGKVQISSALRLPLPPDPEARLDGARALVPFVEDTYLHQVIG EECCHHHHHHHHHHHCCEEEEEEEECEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHC RSRDGKIVQYPDLPPALAHVRDPQVTEWRIHFHIPVFLERAGLFASTQPEIVKTLALLRE CCCCCCEEECCCCCHHHHHCCCCCCEEEEEEEEEEEHHECCCCCCCCCHHHHHHHHHHHH KGFTRHLEIETYTWDVLPEALKLPLLCSIEREYRWVMDVL CCCCEEEEEEEEEHHHCHHHHCCCEEEECHHHHHHHHHCC >Mature Secondary Structure MQLPGGVQLTYCTNLHAASSLDEVRANLDRYAVPLKARLSPNAPFGIGLRLSGQESAELL CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCHHHHHH EGQALAAFKAFLDERGLYVFTLNGFPYGPFHGQPVKTQVHAPDWRDAERVAYTQRLAEIL CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH AFLLPEGGEGGISTSPLSYRGWVEADSRSAWIQMTGNLVRVVETLIRLRQRWGRFIHLDL HHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEEC EPEPDGLLQCSDDLARFFREHLLGGGARDLAARLGIDVEQARAYLRDHVQVCFDTCHVAV CCCCCCCEECCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEE MYEDPAQALQTYEQVGLRIGKVQISSALRLPLPPDPEARLDGARALVPFVEDTYLHQVIG EECCHHHHHHHHHHHCCEEEEEEEECEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHC RSRDGKIVQYPDLPPALAHVRDPQVTEWRIHFHIPVFLERAGLFASTQPEIVKTLALLRE CCCCCCEEECCCCCHHHHHCCCCCCEEEEEEEEEEEHHECCCCCCCCCHHHHHHHHHHHH KGFTRHLEIETYTWDVLPEALKLPLLCSIEREYRWVMDVL CCCCEEEEEEEEEHHHCHHHHCCCEEEECHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA