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The map label for this gene is fimZ [C]

Identifier: 94314859

GI number: 94314859

Start: 145455

End: 146117

Strand: Reverse

Name: fimZ [C]

Synonym: Rmet_5940

Alternate gene names: 94314859

Gene position: 146117-145455 (Counterclockwise)

Preceding gene: 94314860

Following gene: 94314858

Centisome position: 5.66

GC content: 61.84

Gene sequence:

>663_bases
ATGGTCGGGCTACCACCAAGGCAGCAAGGCATGGCAAGCATTCTTATCGTCGACGACCACCCAGCGCTACGGCTGGCGCT
GCGTACCCAGCTTTCACAACTGCTGGGCGTGACAACCCTTCTGGAGGCCGATAACGGGCAAGGCGCGCTCAACCTGGTCC
GGCAGCACAGGCCAGACCTTGTCCTGCTGGATCTCGACATCCCCCGCATGAGCGGCCTGGATGCCGTGCCACGCATACGT
GCCCTCCACCCCGCCGTCCGCATCCTGGTACTTTCCGCGCAAGACCCCATCCCGTTCGCAGCACGTGCCTACCACGCCGG
CGCACAAGGCTTCGTGAGCAAGACGCAAAACATGGACGCCATCCTCCGATGCGTCGAAAGCGTGCTTGGGGGCTTCACCG
TATTCCCGAACAACAACCCTCGCGACAACCCGCGCGAAAGCCGCGTCGTGGGCGACAGCGAAGGACTGAGCAAGCTGACG
GACAAGGAAGTGGAAATCCTGCGGATGCTGACCCGGGGCATGAGCAACAAGGCCATCGGCAAGGCGCTGTTCATCAGCAA
CAAGACGGTAAGCAGCTACAAGACCCGCGTGATGAAAAAGCTGGCTGCGGATTCACTGGTGGACCTGATCGACTTTGCCC
GCCGCTGCCGGCTGATTCCATGA

Upstream 100 bases:

>100_bases
CCTTCCATGGAAAATTCCTACACGAACTGCGGAATCGTCGCATTACCGGAGCACTAACGTCTCCCTATACTGCCCCGTCA
TGTAGTGACCGCCCCATTGA

Downstream 100 bases:

>100_bases
CGTCCTCCGGCACCCCCTCCGTGCTAACCACCGAGGAATGCCAGGCGTTCGGCCCGGCGCTGGCAAGCGCCGCGCGCGAG
GACCCCACCGTGTACCAACT

Product: DNA-binding response regulator, LuxR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MVGLPPRQQGMASILIVDDHPALRLALRTQLSQLLGVTTLLEADNGQGALNLVRQHRPDLVLLDLDIPRMSGLDAVPRIR
ALHPAVRILVLSAQDPIPFAARAYHAGAQGFVSKTQNMDAILRCVESVLGGFTVFPNNNPRDNPRESRVVGDSEGLSKLT
DKEVEILRMLTRGMSNKAIGKALFISNKTVSSYKTRVMKKLAADSLVDLIDFARRCRLIP

Sequences:

>Translated_220_residues
MVGLPPRQQGMASILIVDDHPALRLALRTQLSQLLGVTTLLEADNGQGALNLVRQHRPDLVLLDLDIPRMSGLDAVPRIR
ALHPAVRILVLSAQDPIPFAARAYHAGAQGFVSKTQNMDAILRCVESVLGGFTVFPNNNPRDNPRESRVVGDSEGLSKLT
DKEVEILRMLTRGMSNKAIGKALFISNKTVSSYKTRVMKKLAADSLVDLIDFARRCRLIP
>Mature_220_residues
MVGLPPRQQGMASILIVDDHPALRLALRTQLSQLLGVTTLLEADNGQGALNLVRQHRPDLVLLDLDIPRMSGLDAVPRIR
ALHPAVRILVLSAQDPIPFAARAYHAGAQGFVSKTQNMDAILRCVESVLGGFTVFPNNNPRDNPRESRVVGDSEGLSKLT
DKEVEILRMLTRGMSNKAIGKALFISNKTVSSYKTRVMKKLAADSLVDLIDFARRCRLIP

Specific function: Probable transcriptional regulator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=208, Percent_Identity=34.1346153846154, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1788712, Length=208, Percent_Identity=34.1346153846154, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1788222, Length=206, Percent_Identity=29.126213592233, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1788521, Length=191, Percent_Identity=32.4607329842932, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787473, Length=188, Percent_Identity=30.3191489361702, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790102, Length=215, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24122; Mature: 24122

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGLPPRQQGMASILIVDDHPALRLALRTQLSQLLGVTTLLEADNGQGALNLVRQHRPDL
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCE
VLLDLDIPRMSGLDAVPRIRALHPAVRILVLSAQDPIPFAARAYHAGAQGFVSKTQNMDA
EEEECCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHCCHHHHHHHHCCHHH
ILRCVESVLGGFTVFPNNNPRDNPRESRVVGDSEGLSKLTDKEVEILRMLTRGMSNKAIG
HHHHHHHHHCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
KALFISNKTVSSYKTRVMKKLAADSLVDLIDFARRCRLIP
HEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVGLPPRQQGMASILIVDDHPALRLALRTQLSQLLGVTTLLEADNGQGALNLVRQHRPDL
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCE
VLLDLDIPRMSGLDAVPRIRALHPAVRILVLSAQDPIPFAARAYHAGAQGFVSKTQNMDA
EEEECCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHCCHHHHHHHHCCHHH
ILRCVESVLGGFTVFPNNNPRDNPRESRVVGDSEGLSKLTDKEVEILRMLTRGMSNKAIG
HHHHHHHHHCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
KALFISNKTVSSYKTRVMKKLAADSLVDLIDFARRCRLIP
HEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3127651; 10984043; 2314271 [H]