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The map label for this gene is ylbK [H]

Identifier: 94314838

GI number: 94314838

Start: 120410

End: 122662

Strand: Reverse

Name: ylbK [H]

Synonym: Rmet_5919

Alternate gene names: 94314838

Gene position: 122662-120410 (Counterclockwise)

Preceding gene: 94314842

Following gene: 94314837

Centisome position: 4.75

GC content: 65.34

Gene sequence:

>2253_bases
ATGTCATCTGCGATGCGCCACGCCTCTGCCCTTCTTCGCTGCGCCGCATGGTTGGCAGTGCTGTGTTCGGGCGCGATAGC
CGGCCCGTCGGCACTGGCGGCCGAGCCCGCCGCGGCATCGGCGCCGCAGGGCCGGCCGAAGATCTGCCTGGTGCTTTCGG
GCGGCGGCGCGCGTGGCGCGGCCCATATTGGCGTGCTCAAGGTGCTCGAGGAACTGCGCGTGCCGATCGATTGCATCGCC
GGCACCAGCATGGGATCGATCGTCGGCGGCGCGTACGCGACCGGCATGAGCACGTCGGACATGGAGAAACTCGTCGGCGG
GCTGACGACGGGAACGATCTTCAATGAGCGCCCGCCCCGTCAGGATCTGGCCATTCGCCGCAAGATCGACGACCACACGA
ACCTTTTCACGCCCGAGATCGGCGTGCGCTCGGACGGCCTGCTTTTGCCCAAGGGTGCCGTCTCGGGCGTGCAGCTCGAA
ACCGTATTGCGGCAGCTCGCCAATGCTCCCGGCTATCGCAACTTCGACACACTGCCGATTCCGTATCGGGCAGTCGCCAC
GGATCTGGTCGCAGGTACGCCGGTGGTGTTCAGCCAGGGCGAACTGGCCAACGTGATGCGGGCAAGCATGTCGGTGCCGG
GCGCGGTAGCGCCCACCGAGTATGAAGGCAAGCTGCTGGTCGATGGCGGCCTGACCGACAACCTGCCCGTCGACGTGGCG
CGGGCGATGGGCGCGGACATCATCATCGCCGTCAATCTCGGCACACCGCTGATGAAGCGCGAAGAGCTGACCTCGATCAT
CGGGGTAACCGGACAGATGCTCAACATCCTGACCGAGCAGAACGTGCGCACATCGCTGGCCTCCTTGAGGCCCACCGACA
TCCTCATCAAGCCCGAATTGGGGGATTTCTCGGCAGGTGATTTCGACCACCTGCCCAAGACGATCCCGATCGGCGAGGCC
GCCGCACGGAAAGAGGCGAGCCGGCTGTCCGAGCTGTCGATCCCGCCGGCACAATACGCCCAACTGCGCGCGCGACAGGT
GGCGCTGCCGCCGCCCGACGTGCGGCCCGTCGACGAAATCCGCTTTGCGCCGATGGAACGTGTAAATCCGGAGTTCGCGG
CCGCCACGATGGAGACCAAGCCCGGTGAGCCGATCACGCAGGCCACTCTCGATCGCGACATGCGCCGCCTGTTCGGCACC
GGCGACTTCGAGCATGTGAACTATCGCTTCCTGGAGGAACCGGGCAAGCGCGTGCTTTCGGTCGATGCGATCGAGAAATC
CTACGGCCCCGACTATCTGCGCTTCGGTCTCGGGCTGAGCACCGACTTCCGCGGCGATGCCTACTTCAACCTGCTGGCCA
GCTACCGCCGCACGTGGCTGAACTCGCTCGGGGCGGAGTGGCGAACCGATGCGCAGGTGGGTCAGACTTCGAGCCTGATC
AGCGAGTTCTACCAGCCGCTCGATACGCGCCAGCTTTTCTTCGTGGCGCCACGTATCGAACTGGAGCGGCGGCCAGTCAA
TGTCTTCAGCGGCAGCACCAGACTGGCCCAGTACGATCTGCGCCGCACCGACTTCGCATTCGACATCGGCAGCCAGATCA
CCAAGTACGGCGAGGCCCGGCTTGGCGTGGTCGTTGGAGAGCAGAATGCTTCGCTATCCACCGGCCCCGCGTATCTGAGT
CCCGGCCCTGGCCGCGTCAACCGGCGCGCCATCGAAGGCCGGCTGGTCGCGGATCAGCTCGACAACCTCAACTTCCCGCG
CTTCGGGTACGGCGGCACGCTGAACGTCTACGCCTCGCAGGGTGGCATGGGCGCGACCGATACCTATACCAAGGGCGATA
TCTCAGGCGCGTGGGCATACTCGATCGGCAATAACACGCTCAGTTTGGCGTTCAAGGCCGGCAGCAATATCGGCGGCCCC
GCCCTGCCGAAGTACGACCTGTTCCAATGGGGTGGCTTCCTGCAGCAGTCGGGGTACAGCACGGGGCAACTCATCGGCGG
CAATTTGCAGTTCGCGCGGATGGTCTACTACAACAAGCTGATCCACCAGACGTTCTTCGACGGCGTCTACGCCGGCTTCT
CGCTTGAGGCCGGGCGCGTCGGCGCGCCGCTGGTGCCGGGTAGTCCAACCGGGCTGCTGAAGTCGATGGCGGCATTCCTG
GGCATCGACAGCCCGGTCGGGCCGCTTTACCTCGGCTATGGCCGGGCGACGGGCGGCAGCTATGCGTTCTACCTGTTCCT
GGGCAAGCCTTGA

Upstream 100 bases:

>100_bases
GATGAATTGTTTTGATCTTGGCGCATGGCATACGCCACATGCGGACCACACTGCTAGTGTTGAAGGTCGCGGCAATGTCC
TTCGCCGCCCCCTCTTCTTC

Downstream 100 bases:

>100_bases
AGATGCCTTTTGAGGAAGCCTTGAGCAATCCTGAAGCCGCCGCGAACAGCCCCTGAGCGGCCGATGCGCCGCCCGGCGCC
GGCTGCCAGTGCACTCCCCC

Product: putative alpha-beta hydrolase superfamily esterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 750; Mature: 749

Protein sequence:

>750_residues
MSSAMRHASALLRCAAWLAVLCSGAIAGPSALAAEPAAASAPQGRPKICLVLSGGGARGAAHIGVLKVLEELRVPIDCIA
GTSMGSIVGGAYATGMSTSDMEKLVGGLTTGTIFNERPPRQDLAIRRKIDDHTNLFTPEIGVRSDGLLLPKGAVSGVQLE
TVLRQLANAPGYRNFDTLPIPYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPTEYEGKLLVDGGLTDNLPVDVA
RAMGADIIIAVNLGTPLMKREELTSIIGVTGQMLNILTEQNVRTSLASLRPTDILIKPELGDFSAGDFDHLPKTIPIGEA
AARKEASRLSELSIPPAQYAQLRARQVALPPPDVRPVDEIRFAPMERVNPEFAAATMETKPGEPITQATLDRDMRRLFGT
GDFEHVNYRFLEEPGKRVLSVDAIEKSYGPDYLRFGLGLSTDFRGDAYFNLLASYRRTWLNSLGAEWRTDAQVGQTSSLI
SEFYQPLDTRQLFFVAPRIELERRPVNVFSGSTRLAQYDLRRTDFAFDIGSQITKYGEARLGVVVGEQNASLSTGPAYLS
PGPGRVNRRAIEGRLVADQLDNLNFPRFGYGGTLNVYASQGGMGATDTYTKGDISGAWAYSIGNNTLSLAFKAGSNIGGP
ALPKYDLFQWGGFLQQSGYSTGQLIGGNLQFARMVYYNKLIHQTFFDGVYAGFSLEAGRVGAPLVPGSPTGLLKSMAAFL
GIDSPVGPLYLGYGRATGGSYAFYLFLGKP

Sequences:

>Translated_750_residues
MSSAMRHASALLRCAAWLAVLCSGAIAGPSALAAEPAAASAPQGRPKICLVLSGGGARGAAHIGVLKVLEELRVPIDCIA
GTSMGSIVGGAYATGMSTSDMEKLVGGLTTGTIFNERPPRQDLAIRRKIDDHTNLFTPEIGVRSDGLLLPKGAVSGVQLE
TVLRQLANAPGYRNFDTLPIPYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPTEYEGKLLVDGGLTDNLPVDVA
RAMGADIIIAVNLGTPLMKREELTSIIGVTGQMLNILTEQNVRTSLASLRPTDILIKPELGDFSAGDFDHLPKTIPIGEA
AARKEASRLSELSIPPAQYAQLRARQVALPPPDVRPVDEIRFAPMERVNPEFAAATMETKPGEPITQATLDRDMRRLFGT
GDFEHVNYRFLEEPGKRVLSVDAIEKSYGPDYLRFGLGLSTDFRGDAYFNLLASYRRTWLNSLGAEWRTDAQVGQTSSLI
SEFYQPLDTRQLFFVAPRIELERRPVNVFSGSTRLAQYDLRRTDFAFDIGSQITKYGEARLGVVVGEQNASLSTGPAYLS
PGPGRVNRRAIEGRLVADQLDNLNFPRFGYGGTLNVYASQGGMGATDTYTKGDISGAWAYSIGNNTLSLAFKAGSNIGGP
ALPKYDLFQWGGFLQQSGYSTGQLIGGNLQFARMVYYNKLIHQTFFDGVYAGFSLEAGRVGAPLVPGSPTGLLKSMAAFL
GIDSPVGPLYLGYGRATGGSYAFYLFLGKP
>Mature_749_residues
SSAMRHASALLRCAAWLAVLCSGAIAGPSALAAEPAAASAPQGRPKICLVLSGGGARGAAHIGVLKVLEELRVPIDCIAG
TSMGSIVGGAYATGMSTSDMEKLVGGLTTGTIFNERPPRQDLAIRRKIDDHTNLFTPEIGVRSDGLLLPKGAVSGVQLET
VLRQLANAPGYRNFDTLPIPYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPTEYEGKLLVDGGLTDNLPVDVAR
AMGADIIIAVNLGTPLMKREELTSIIGVTGQMLNILTEQNVRTSLASLRPTDILIKPELGDFSAGDFDHLPKTIPIGEAA
ARKEASRLSELSIPPAQYAQLRARQVALPPPDVRPVDEIRFAPMERVNPEFAAATMETKPGEPITQATLDRDMRRLFGTG
DFEHVNYRFLEEPGKRVLSVDAIEKSYGPDYLRFGLGLSTDFRGDAYFNLLASYRRTWLNSLGAEWRTDAQVGQTSSLIS
EFYQPLDTRQLFFVAPRIELERRPVNVFSGSTRLAQYDLRRTDFAFDIGSQITKYGEARLGVVVGEQNASLSTGPAYLSP
GPGRVNRRAIEGRLVADQLDNLNFPRFGYGGTLNVYASQGGMGATDTYTKGDISGAWAYSIGNNTLSLAFKAGSNIGGPA
LPKYDLFQWGGFLQQSGYSTGQLIGGNLQFARMVYYNKLIHQTFFDGVYAGFSLEAGRVGAPLVPGSPTGLLKSMAAFLG
IDSPVGPLYLGYGRATGGSYAFYLFLGKP

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=210, Percent_Identity=34.2857142857143, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI260656041, Length=210, Percent_Identity=34.2857142857143, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI116256487, Length=210, Percent_Identity=34.2857142857143, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI260656037, Length=210, Percent_Identity=34.2857142857143, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI260656043, Length=210, Percent_Identity=34.2857142857143, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI148727335, Length=210, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=2e-22,
Organism=Homo sapiens, GI148727290, Length=210, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=3e-22,
Organism=Escherichia coli, GI226510936, Length=326, Percent_Identity=28.2208588957055, Blast_Score=102, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI193204778, Length=191, Percent_Identity=28.7958115183246, Blast_Score=76, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71997299, Length=293, Percent_Identity=26.962457337884, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71997289, Length=293, Percent_Identity=26.962457337884, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 80345; Mature: 80213

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAMRHASALLRCAAWLAVLCSGAIAGPSALAAEPAAASAPQGRPKICLVLSGGGARGA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCH
AHIGVLKVLEELRVPIDCIAGTSMGSIVGGAYATGMSTSDMEKLVGGLTTGTIFNERPPR
HHHHHHHHHHHHCCCCEECCCCCHHHHHCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCH
QDLAIRRKIDDHTNLFTPEIGVRSDGLLLPKGAVSGVQLETVLRQLANAPGYRNFDTLPI
HHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCC
PYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPTEYEGKLLVDGGLTDNLPVDVA
CHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH
RAMGADIIIAVNLGTPLMKREELTSIIGVTGQMLNILTEQNVRTSLASLRPTDILIKPEL
HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
GDFSAGDFDHLPKTIPIGEAAARKEASRLSELSIPPAQYAQLRARQVALPPPDVRPVDEI
CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCHHHH
RFAPMERVNPEFAAATMETKPGEPITQATLDRDMRRLFGTGDFEHVNYRFLEEPGKRVLS
HCCCHHHCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEE
VDAIEKSYGPDYLRFGLGLSTDFRGDAYFNLLASYRRTWLNSLGAEWRTDAQVGQTSSLI
EHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
SEFYQPLDTRQLFFVAPRIELERRPVNVFSGSTRLAQYDLRRTDFAFDIGSQITKYGEAR
HHHHCCCCCCEEEEEECCEEECCCCCEEECCCCHHHHHHHHHCCEEHHHHHHHHHHCCCE
LGVVVGEQNASLSTGPAYLSPGPGRVNRRAIEGRLVADQLDNLNFPRFGYGGTLNVYASQ
EEEEECCCCCCCCCCCCEECCCCCCCCHHHHCCEEHHHHHCCCCCCCCCCCCEEEEEECC
GGMGATDTYTKGDISGAWAYSIGNNTLSLAFKAGSNIGGPALPKYDLFQWGGFLQQSGYS
CCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHCCHHHHCCCC
TGQLIGGNLQFARMVYYNKLIHQTFFDGVYAGFSLEAGRVGAPLVPGSPTGLLKSMAAFL
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHH
GIDSPVGPLYLGYGRATGGSYAFYLFLGKP
CCCCCCCCEEEECCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SSAMRHASALLRCAAWLAVLCSGAIAGPSALAAEPAAASAPQGRPKICLVLSGGGARGA
CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCH
AHIGVLKVLEELRVPIDCIAGTSMGSIVGGAYATGMSTSDMEKLVGGLTTGTIFNERPPR
HHHHHHHHHHHHCCCCEECCCCCHHHHHCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCH
QDLAIRRKIDDHTNLFTPEIGVRSDGLLLPKGAVSGVQLETVLRQLANAPGYRNFDTLPI
HHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCC
PYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPTEYEGKLLVDGGLTDNLPVDVA
CHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH
RAMGADIIIAVNLGTPLMKREELTSIIGVTGQMLNILTEQNVRTSLASLRPTDILIKPEL
HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
GDFSAGDFDHLPKTIPIGEAAARKEASRLSELSIPPAQYAQLRARQVALPPPDVRPVDEI
CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCHHHH
RFAPMERVNPEFAAATMETKPGEPITQATLDRDMRRLFGTGDFEHVNYRFLEEPGKRVLS
HCCCHHHCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEE
VDAIEKSYGPDYLRFGLGLSTDFRGDAYFNLLASYRRTWLNSLGAEWRTDAQVGQTSSLI
EHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
SEFYQPLDTRQLFFVAPRIELERRPVNVFSGSTRLAQYDLRRTDFAFDIGSQITKYGEAR
HHHHCCCCCCEEEEEECCEEECCCCCEEECCCCHHHHHHHHHCCEEHHHHHHHHHHCCCE
LGVVVGEQNASLSTGPAYLSPGPGRVNRRAIEGRLVADQLDNLNFPRFGYGGTLNVYASQ
EEEEECCCCCCCCCCCCEECCCCCCCCHHHHCCEEHHHHHCCCCCCCCCCCCEEEEEECC
GGMGATDTYTKGDISGAWAYSIGNNTLSLAFKAGSNIGGPALPKYDLFQWGGFLQQSGYS
CCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHCCHHHHCCCC
TGQLIGGNLQFARMVYYNKLIHQTFFDGVYAGFSLEAGRVGAPLVPGSPTGLLKSMAAFL
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHH
GIDSPVGPLYLGYGRATGGSYAFYLFLGKP
CCCCCCCCEEEECCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]