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The map label for this gene is ycgR [H]

Identifier: 94314836

GI number: 94314836

Start: 118407

End: 119201

Strand: Direct

Name: ycgR [H]

Synonym: Rmet_5917

Alternate gene names: 94314836

Gene position: 118407-119201 (Clockwise)

Preceding gene: 94314835

Following gene: 94314839

Centisome position: 4.59

GC content: 62.77

Gene sequence:

>795_bases
ATGAGTCTTCAAGAACCCATCGGGTCCAAGCTGGCCCAATCACAGTCCCAGGTCGATGGCGAGGCCGACGAGCGGGACGC
TGCGGCCCAGTCGGATGAACGCTACCGGTTGACGCACAGCTCACAGATCGGCACCGTGCTGCGCGATATGGCCTGGCAGA
AGTGCCTGCTGAATGTGCGCTCGAAGGGCGGCTCCGAGATCGTGACGTCGATCCTGCATGTCGATCCGGCCAACAAGACC
TTCATTTTCGATTGGTGCCGTGCCGATGGTGAGCGTCAGGCATTGATGTCGTCCGAGCAGAACGCCTTTTCCGGCCTGCT
GCGCGGAGTGCCGGTCAACTTTATCGTTGGCACGCCGGGCGCCACGCGCTTCGAAGGCGGTCCCGCGTTCATCGCCGATT
TTCCCGAAAAGCTGTACCACTTCCAGCGCCGCCGCCATTTTCGCGCGCGCACGTTGCTGACCAAGGGCTACCGCTGCGAA
CTGCGAATTCCCGAGACGGAAAAGCAGGCGCTGCAGCTCGATATTGCTGACTTGTCGTTGTCAGGGGTGGGTTTGCGCTC
GCGCGCGGTGGGCGCTGACCAGTTGCCCGTGGGCACCGTGATCAAGCGCTGCCTGCTGGACTTTGCCGAACTCGGCCGAC
TGGAGCTCGACATGCAGGTGGTGGGTCATTGGCTGGTGGGCTTCGACGACAACACCGTGCACCACTACGGATGCGCGTTC
CTGAACCCGGACGGCCGCATGGAAAACTTCCTGCAGCGCCTGGTGTTCCAGCTCGAACTGGCGCACCGGGGCTGA

Upstream 100 bases:

>100_bases
ACCATGCGGCGGCTGGTCGCCGCGAGCTGTCACCGCTTTCCAGTTCCCGCCCCCCAAAAGGGTGCGTTGTGGCGCAACCC
TTTCGATGTAGCGTATCTCC

Downstream 100 bases:

>100_bases
CACCCCGGCGCAAGCGGAAAGCGGCTCAGTTTCCGCTTAGCTTCCGCTCAGTTTCCGCTTAGTTGCCAATCATCTTGCCG
ATCGCGGCTGCCGCCTCCCG

Product: putative YcgR-like protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR [H]

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSLQEPIGSKLAQSQSQVDGEADERDAAAQSDERYRLTHSSQIGTVLRDMAWQKCLLNVRSKGGSEIVTSILHVDPANKT
FIFDWCRADGERQALMSSEQNAFSGLLRGVPVNFIVGTPGATRFEGGPAFIADFPEKLYHFQRRRHFRARTLLTKGYRCE
LRIPETEKQALQLDIADLSLSGVGLRSRAVGADQLPVGTVIKRCLLDFAELGRLELDMQVVGHWLVGFDDNTVHHYGCAF
LNPDGRMENFLQRLVFQLELAHRG

Sequences:

>Translated_264_residues
MSLQEPIGSKLAQSQSQVDGEADERDAAAQSDERYRLTHSSQIGTVLRDMAWQKCLLNVRSKGGSEIVTSILHVDPANKT
FIFDWCRADGERQALMSSEQNAFSGLLRGVPVNFIVGTPGATRFEGGPAFIADFPEKLYHFQRRRHFRARTLLTKGYRCE
LRIPETEKQALQLDIADLSLSGVGLRSRAVGADQLPVGTVIKRCLLDFAELGRLELDMQVVGHWLVGFDDNTVHHYGCAF
LNPDGRMENFLQRLVFQLELAHRG
>Mature_263_residues
SLQEPIGSKLAQSQSQVDGEADERDAAAQSDERYRLTHSSQIGTVLRDMAWQKCLLNVRSKGGSEIVTSILHVDPANKTF
IFDWCRADGERQALMSSEQNAFSGLLRGVPVNFIVGTPGATRFEGGPAFIADFPEKLYHFQRRRHFRARTLLTKGYRCEL
RIPETEKQALQLDIADLSLSGVGLRSRAVGADQLPVGTVIKRCLLDFAELGRLELDMQVVGHWLVGFDDNTVHHYGCAFL
NPDGRMENFLQRLVFQLELAHRG

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=220, Percent_Identity=25, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 29557; Mature: 29426

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQEPIGSKLAQSQSQVDGEADERDAAAQSDERYRLTHSSQIGTVLRDMAWQKCLLNVR
CCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
SKGGSEIVTSILHVDPANKTFIFDWCRADGERQALMSSEQNAFSGLLRGVPVNFIVGTPG
CCCCHHHHHHHHHCCCCCCEEEEEEHHCCCHHHHHHHCCHHHHHHHHHCCCEEEEEECCC
ATRFEGGPAFIADFPEKLYHFQRRRHFRARTLLTKGYRCELRIPETEKQALQLDIADLSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHEEEHHHCEE
SGVGLRSRAVGADQLPVGTVIKRCLLDFAELGRLELDMQVVGHWLVGFDDNTVHHYGCAF
CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCEEEEEEEE
LNPDGRMENFLQRLVFQLELAHRG
ECCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLQEPIGSKLAQSQSQVDGEADERDAAAQSDERYRLTHSSQIGTVLRDMAWQKCLLNVR
CCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
SKGGSEIVTSILHVDPANKTFIFDWCRADGERQALMSSEQNAFSGLLRGVPVNFIVGTPG
CCCCHHHHHHHHHCCCCCCEEEEEEHHCCCHHHHHHHCCHHHHHHHHHCCCEEEEEECCC
ATRFEGGPAFIADFPEKLYHFQRRRHFRARTLLTKGYRCELRIPETEKQALQLDIADLSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHEEEHHHCEE
SGVGLRSRAVGADQLPVGTVIKRCLLDFAELGRLELDMQVVGHWLVGFDDNTVHHYGCAF
CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCEEEEEEEE
LNPDGRMENFLQRLVFQLELAHRG
ECCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA