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The map label for this gene is yfdE [H]

Identifier: 94314814

GI number: 94314814

Start: 94275

End: 95414

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_5895

Alternate gene names: 94314814

Gene position: 94275-95414 (Clockwise)

Preceding gene: 94314813

Following gene: 94314819

Centisome position: 3.65

GC content: 65.88

Gene sequence:

>1140_bases
ATGACGCCACTCACACCCGGCGCGCTGGCAGGCATTCGCGTAGTCGATCTGTCGCGCATTCTGGGCGGCCCGCTTTGCGG
CCAGATCCTCGGCGATCACGGCGCGGACGTACTCAAGATCGAGCCTCCGCAGGGCGATGACACACGCACCTGGGGGCCGC
CGTTCCGCGATGGCGTGGCGTCGTACTACTTCGGCCTCAATCGCAACAAGCGCATCATGAAGCTGGACCTGACGGCCGAC
ACCGACCGCGAAGTCTTGCTGACGCTGCTGGCCGATGCCGACGTGCTGATCGAGAACTTCAAGACCGGCACGCTCGAGAA
ATGGGGCCTTGGTTTCGATGTGCTGTCGCAGCGCTTCCCCCGGCTCGTGCATTGCCGCGTGTCGGGCTTCGGCGCCGATG
GTCCGCTGGGTGGACTGCCGGGTTATGACGCGGCGATCCAGGCGATGGCCGGCATCATGAGCATCAACGGCGAGGCCGAC
CGAGAACCGCTGCGCGTTGGTTTGCCCGTGGTGGACATGGTCACTGGTCTGAACGCCGCGCTGGGCGTGCTGCTGGCATT
GCAGGAGCGCGAACGCAGCGGCCGTGGGCAGTTCGTGGAATCGGCGCTATATGACTCGGGCCTGTCGCTGCTGCATCCCC
ATGCGGCCAACTGGTTCATGAGTGGCAAGACGCCCGGGCGCACCGGTAACGCGCATCCGAACATCTACCCGTACGACACG
GTGGCCACCGCGACCGATCCGATCTTCCTTGCCGTCGGTAACGACCGGCAATTCCGCATCCTGTGCGAGTACCTCGGCGT
GGCGGAGCTGGCCGACGACGAACGCTTTGCAACGGCAGGCGCGCGCTCGGTCAATCGGGCGCAATTGAAGGGCACGCTGG
AATCGAAGCTGGCCACGTGGGACGGCAAGGCGCTGGCCGACGAACTGTCTGCGGCCGGTGTACCGTGCGCACCGGTGTTG
TCGGTGCCCGATGCACTGACGCATCCGCATACCGCCCATCGCGAGATGGTGGTGGAGATGCCCGGCGGTTACAAGGGCCT
GGGCGCTCCGGTCAAACTGAGCCGCACGCCGGCGACGTACCGGTATGCACCGCTGACCGAAGGCAACCAGTTCCTGCCGC
GCGAGGCGGCGAACGATTGA

Upstream 100 bases:

>100_bases
AGCTTGGTGGCTTCGTGAAGTCGGAAGTCGGCAAATGGCGTTCCGTGGTGCAGAAGTCGGGCGCGCAGCTCGACTGATCA
TGACAAGAACAGGAGGAGAC

Downstream 100 bases:

>100_bases
GTTGGGTGCCAACCGTTGGTATGCGCCCCCCTCTCCCGGCGGGAGAGGGGGGGCAAAAACACCCTCACCGCTTCCTACCC
CGGAATCATCCCCGTCAGCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MTPLTPGALAGIRVVDLSRILGGPLCGQILGDHGADVLKIEPPQGDDTRTWGPPFRDGVASYYFGLNRNKRIMKLDLTAD
TDREVLLTLLADADVLIENFKTGTLEKWGLGFDVLSQRFPRLVHCRVSGFGADGPLGGLPGYDAAIQAMAGIMSINGEAD
REPLRVGLPVVDMVTGLNAALGVLLALQERERSGRGQFVESALYDSGLSLLHPHAANWFMSGKTPGRTGNAHPNIYPYDT
VATATDPIFLAVGNDRQFRILCEYLGVAELADDERFATAGARSVNRAQLKGTLESKLATWDGKALADELSAAGVPCAPVL
SVPDALTHPHTAHREMVVEMPGGYKGLGAPVKLSRTPATYRYAPLTEGNQFLPREAAND

Sequences:

>Translated_379_residues
MTPLTPGALAGIRVVDLSRILGGPLCGQILGDHGADVLKIEPPQGDDTRTWGPPFRDGVASYYFGLNRNKRIMKLDLTAD
TDREVLLTLLADADVLIENFKTGTLEKWGLGFDVLSQRFPRLVHCRVSGFGADGPLGGLPGYDAAIQAMAGIMSINGEAD
REPLRVGLPVVDMVTGLNAALGVLLALQERERSGRGQFVESALYDSGLSLLHPHAANWFMSGKTPGRTGNAHPNIYPYDT
VATATDPIFLAVGNDRQFRILCEYLGVAELADDERFATAGARSVNRAQLKGTLESKLATWDGKALADELSAAGVPCAPVL
SVPDALTHPHTAHREMVVEMPGGYKGLGAPVKLSRTPATYRYAPLTEGNQFLPREAAND
>Mature_378_residues
TPLTPGALAGIRVVDLSRILGGPLCGQILGDHGADVLKIEPPQGDDTRTWGPPFRDGVASYYFGLNRNKRIMKLDLTADT
DREVLLTLLADADVLIENFKTGTLEKWGLGFDVLSQRFPRLVHCRVSGFGADGPLGGLPGYDAAIQAMAGIMSINGEADR
EPLRVGLPVVDMVTGLNAALGVLLALQERERSGRGQFVESALYDSGLSLLHPHAANWFMSGKTPGRTGNAHPNIYPYDTV
ATATDPIFLAVGNDRQFRILCEYLGVAELADDERFATAGARSVNRAQLKGTLESKLATWDGKALADELSAAGVPCAPVLS
VPDALTHPHTAHREMVVEMPGGYKGLGAPVKLSRTPATYRYAPLTEGNQFLPREAAND

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=333, Percent_Identity=33.6336336336336, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI300863124, Length=325, Percent_Identity=33.5384615384615, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI13376042, Length=325, Percent_Identity=29.8461538461538, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI300863126, Length=333, Percent_Identity=29.7297297297297, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI266456254, Length=332, Percent_Identity=28.0120481927711, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42794625, Length=332, Percent_Identity=28.0120481927711, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI266458393, Length=249, Percent_Identity=32.5301204819277, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=32.5301204819277, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=36.986301369863, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=36.986301369863, Blast_Score=86, Evalue=8e-17,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=41.025641025641, Blast_Score=270, Evalue=1e-73,
Organism=Escherichia coli, GI1788717, Length=393, Percent_Identity=29.5165394402036, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1786222, Length=342, Percent_Identity=26.6081871345029, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=266, Percent_Identity=27.4436090225564, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=214, Percent_Identity=28.5046728971963, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648431, Length=363, Percent_Identity=38.8429752066116, Blast_Score=238, Evalue=5e-63,
Organism=Drosophila melanogaster, GI24585488, Length=374, Percent_Identity=29.6791443850267, Blast_Score=109, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40567; Mature: 40435

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLTPGALAGIRVVDLSRILGGPLCGQILGDHGADVLKIEPPQGDDTRTWGPPFRDGVA
CCCCCCCHHHCCCEEEHHHHHCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
SYYFGLNRNKRIMKLDLTADTDREVLLTLLADADVLIENFKTGTLEKWGLGFDVLSQRFP
HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHCC
RLVHCRVSGFGADGPLGGLPGYDAAIQAMAGIMSINGEADREPLRVGLPVVDMVTGLNAA
EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHH
LGVLLALQERERSGRGQFVESALYDSGLSLLHPHAANWFMSGKTPGRTGNAHPNIYPYDT
HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
VATATDPIFLAVGNDRQFRILCEYLGVAELADDERFATAGARSVNRAQLKGTLESKLATW
CCCCCCCEEEEECCCCCEEHHHHHHCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCC
DGKALADELSAAGVPCAPVLSVPDALTHPHTAHREMVVEMPGGYKGLGAPVKLSRTPATY
CCHHHHHHHHHCCCCCCHHHCCCHHHCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCE
RYAPLTEGNQFLPREAAND
EECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPLTPGALAGIRVVDLSRILGGPLCGQILGDHGADVLKIEPPQGDDTRTWGPPFRDGVA
CCCCCCHHHCCCEEEHHHHHCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
SYYFGLNRNKRIMKLDLTADTDREVLLTLLADADVLIENFKTGTLEKWGLGFDVLSQRFP
HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHCC
RLVHCRVSGFGADGPLGGLPGYDAAIQAMAGIMSINGEADREPLRVGLPVVDMVTGLNAA
EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHH
LGVLLALQERERSGRGQFVESALYDSGLSLLHPHAANWFMSGKTPGRTGNAHPNIYPYDT
HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
VATATDPIFLAVGNDRQFRILCEYLGVAELADDERFATAGARSVNRAQLKGTLESKLATW
CCCCCCCEEEEECCCCCEEHHHHHHCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCC
DGKALADELSAAGVPCAPVLSVPDALTHPHTAHREMVVEMPGGYKGLGAPVKLSRTPATY
CCHHHHHHHHHCCCCCCHHHCCCHHHCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCE
RYAPLTEGNQFLPREAAND
EECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]