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The map label for this gene is sdsB [H]

Identifier: 94314680

GI number: 94314680

Start: 2522354

End: 2523301

Strand: Direct

Name: sdsB [H]

Synonym: Rmet_5761

Alternate gene names: 94314680

Gene position: 2522354-2523301 (Clockwise)

Preceding gene: 94314672

Following gene: 94314681

Centisome position: 97.76

GC content: 62.66

Gene sequence:

>948_bases
ATGAATACGCGTCAACTACGCCACTTTCTGGCCCTTCTCGATACTGGCTCATTGGCCGCGGCGGCCGAATCGGTTCATCT
GAGCCAGCCAGCGCTATCTCGCAGCATCCGCGCGCTTGAAGACATGCTTGGCGTGCCGCTGTTCGACAGGAATGACCGGC
GGCTGCGCCCGACCACCTATGCCATCGCCTATGCGCCCCGCGCGCGCAGCATGCTTTCCGACGAAAAAGAAGGCCTGCGG
ACACTCGGCCTGATGCAGTCCGGTGATCTCGGCACGTTCTCGGTAGGCATGGGCTCTTCGCTTGCCACGCCAATCCTGCG
CCCAATGCTGGCCGAACTGCTGCGCACATCGCCTGGACTGCGGCTGCGCAGCCTGATCGACACGTCCGAGCGACTCCTCG
ATGCCCTGCATGCCGAACGCATCGACTTCTTCGTCGGCGACACCCGCGTGGCAAAGCTGCACGATGGGCTGGCGATCGAA
TCCATCTTTCCTTGCACATTTGGCTGGTATGCGCGGCGCGATCACCCGCTCGCAAACAACGAAAATGTCAGCGCCGCGCA
GATCCGCGAGTACCCTCTGATCGCGCCCGGCTACTTCGAACCATCGCTGGGACAGCGGCTTGCGCAACTCTACGAACTGC
CCGCGCCCGTGCAGGACCAGTTCGCGCTGATCTCGGACGACATCGGCACCGTACTGGAGATCGTGGCATCCACCGATGCA
GTTGTCCCGCTGACGGACCTTGCCGCGATCTCCGCGCTCAAATCACAGCTCATTGTCGAACTTGCCGTACGGCCCGCACT
GGAACTGGACTTGACGCTCGGTATCGTCCGGCATGGCAACCGCACCATGGCGCCCGCGACCATGATGGCCTTCGAGATCA
TCCGCCAGCGCTTCGCCATGGCGGCAAGCGAGATTGCCACCATCAAAGGACTTGCGGCGGATCGGTGA

Upstream 100 bases:

>100_bases
CGGAATGGATCTGGCCGCAGTTTGGAGACATCCACTACTTGTGTAAATTGCAACTAAATTCTGGTTAGAATGCAATTTAT
GCAAGTGGACTGTCATCGTC

Downstream 100 bases:

>100_bases
TCGCACTCGATCCGCGTATGGGCAGTTCGATCAGTGGGCCGCCTCCAGGACGACTTCCGCGACGATGCCCAGAACGGTCT
GATTCATGACCCATGGCAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNTRQLRHFLALLDTGSLAAAAESVHLSQPALSRSIRALEDMLGVPLFDRNDRRLRPTTYAIAYAPRARSMLSDEKEGLR
TLGLMQSGDLGTFSVGMGSSLATPILRPMLAELLRTSPGLRLRSLIDTSERLLDALHAERIDFFVGDTRVAKLHDGLAIE
SIFPCTFGWYARRDHPLANNENVSAAQIREYPLIAPGYFEPSLGQRLAQLYELPAPVQDQFALISDDIGTVLEIVASTDA
VVPLTDLAAISALKSQLIVELAVRPALELDLTLGIVRHGNRTMAPATMMAFEIIRQRFAMAASEIATIKGLAADR

Sequences:

>Translated_315_residues
MNTRQLRHFLALLDTGSLAAAAESVHLSQPALSRSIRALEDMLGVPLFDRNDRRLRPTTYAIAYAPRARSMLSDEKEGLR
TLGLMQSGDLGTFSVGMGSSLATPILRPMLAELLRTSPGLRLRSLIDTSERLLDALHAERIDFFVGDTRVAKLHDGLAIE
SIFPCTFGWYARRDHPLANNENVSAAQIREYPLIAPGYFEPSLGQRLAQLYELPAPVQDQFALISDDIGTVLEIVASTDA
VVPLTDLAAISALKSQLIVELAVRPALELDLTLGIVRHGNRTMAPATMMAFEIIRQRFAMAASEIATIKGLAADR
>Mature_315_residues
MNTRQLRHFLALLDTGSLAAAAESVHLSQPALSRSIRALEDMLGVPLFDRNDRRLRPTTYAIAYAPRARSMLSDEKEGLR
TLGLMQSGDLGTFSVGMGSSLATPILRPMLAELLRTSPGLRLRSLIDTSERLLDALHAERIDFFVGDTRVAKLHDGLAIE
SIFPCTFGWYARRDHPLANNENVSAAQIREYPLIAPGYFEPSLGQRLAQLYELPAPVQDQFALISDDIGTVLEIVASTDA
VVPLTDLAAISALKSQLIVELAVRPALELDLTLGIVRHGNRTMAPATMMAFEIIRQRFAMAASEIATIKGLAADR

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=240, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=24.6575342465753, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=266, Percent_Identity=21.0526315789474, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081904, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=191, Percent_Identity=29.3193717277487, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787530, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787879, Length=252, Percent_Identity=25.7936507936508, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI48994962, Length=148, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786202, Length=266, Percent_Identity=24.0601503759398, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34458; Mature: 34458

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRQLRHFLALLDTGSLAAAAESVHLSQPALSRSIRALEDMLGVPLFDRNDRRLRPTTY
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
AIAYAPRARSMLSDEKEGLRTLGLMQSGDLGTFSVGMGSSLATPILRPMLAELLRTSPGL
EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCC
RLRSLIDTSERLLDALHAERIDFFVGDTRVAKLHDGLAIESIFPCTFGWYARRDHPLANN
HHHHHHHHHHHHHHHHHHHHHHEEECCCEEEHHHCCEEHHHHCCCCCCCHHCCCCCCCCC
ENVSAAQIREYPLIAPGYFEPSLGQRLAQLYELPAPVQDQFALISDDIGTVLEIVASTDA
CCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
VVPLTDLAAISALKSQLIVELAVRPALELDLTLGIVRHGNRTMAPATMMAFEIIRQRFAM
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEHHHCCCCCCCCHHHHHHHHHHHHHHHH
AASEIATIKGLAADR
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MNTRQLRHFLALLDTGSLAAAAESVHLSQPALSRSIRALEDMLGVPLFDRNDRRLRPTTY
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
AIAYAPRARSMLSDEKEGLRTLGLMQSGDLGTFSVGMGSSLATPILRPMLAELLRTSPGL
EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCC
RLRSLIDTSERLLDALHAERIDFFVGDTRVAKLHDGLAIESIFPCTFGWYARRDHPLANN
HHHHHHHHHHHHHHHHHHHHHHEEECCCEEEHHHCCEEHHHHCCCCCCCHHCCCCCCCCC
ENVSAAQIREYPLIAPGYFEPSLGQRLAQLYELPAPVQDQFALISDDIGTVLEIVASTDA
CCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
VVPLTDLAAISALKSQLIVELAVRPALELDLTLGIVRHGNRTMAPATMMAFEIIRQRFAM
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEHHHCCCCCCCCHHHHHHHHHHHHHHHH
AASEIATIKGLAADR
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]