Click here to switch to the map view.

The map label for this gene is kpsD [H]

Identifier: 94314648

GI number: 94314648

Start: 2488303

End: 2490123

Strand: Reverse

Name: kpsD [H]

Synonym: Rmet_5729

Alternate gene names: 94314648

Gene position: 2490123-2488303 (Counterclockwise)

Preceding gene: 94314649

Following gene: 94314647

Centisome position: 96.51

GC content: 60.19

Gene sequence:

>1821_bases
ATGAAACGAATTGCCTGCTGCCTCGTCGCCGCATCTCTGCTCTTCTCATGGGCAGTGCACGCGCAGACGCCCAACGTTCC
GCTATCCATGCTACCCAACGCACTGCTCGGACTAACGTCCAGCTCGGATAGCAGTCCCTCGACTGACGTCGCCACTGGCC
AAGGCGCGGCAGCACCTGCCTGGCAAAGCGGCCAACCGAGTATCTCTGGCCTGCAATCTCCGATGATTACGGGCGGCACG
CCTTTGCCGGGTACCGGGCAGATCCAGCCGCCGTTGCCGAATATCGGTGCGCAGGCATATATCCCTGCGCAGCGGCTGGG
CGACTACGACGCCAACCAGAAGAGCGAGGTCTTCGGCACTCAGCTATTCACCGGCGCATTCGCCCGCAGCGCGCCATCCA
CCTTCAATCCTGACTACGCTGTTGCCATCGGTGACGGCGTGCGCGTCAGGATCTGGGGCGGGTTCGATTTTGACAGCGTG
CTTACTGTCGATTCGCAGGGCATGATCTTCCTGCCTCATTGTGGACCAATGCGTGTAGCTGGCATTCACAACCGCGACCT
GCAAGCGGCGGTTACCGGTGCGCTGCGCAAGGTCTTCAGTAGTAATGTTTCCATCTACGCGAGTCTTGCCTCGGCGCAGC
CCGTTCGCGTGCTGGTCTCCGGCTTCGTCCGCCATCCCGGCATGTACGAAGGAACGGGGAACGACAATGTGCTGCGCTAT
CTGGACATGGCCGGTGGCGTAGATCCGGACCGGGGTTCCTTCCTGGATATCCAGGTCAAGCGCGGGGCCACAGTACGCTA
CAACGTCGATCTCTATCGCTTCTTGTTGAATGGCGACCTGCCGAGTACGCCCCTGACAGATGGCGACGTGATCTTCGTTG
GTCAGCGGAAGAACACAGTGATGGTCGGCGGCCTGGCAGCGAGCGCCAGGCGTTTTGAATTCAACGGTACCACCACGCTG
GCCCAGATCGCAGCCGCTGCGCGGCCGGACGCCACCTCTACCAACGTGCGCGTCACGCGTGGATCGGGAACGGTGCAGCA
CGTTGAGTACTATCCGCTAAGCAAGACACCAGACGTCACCCTGATGAATGGCGATCTCGTCGAGTTCACAGCCGACAAGC
GGCCCGGCACGATTACGGTTCGGGTGGAAGGCGAGCACCTGGGTCCACAGGAGTATGTCGTGCCTTATGGCACCAAGCTG
GGCGACCTACTGGGTCGCGTGGAGATGACATCCAACTCGCTGCCGGAGAGCACGCAACTCTTTCGTCAAAGCGTGAAGGA
TCGGCAGGCAAAGATGCTCGATACCTCGCTCACGCAGTTGCAAAACAGCGTGCTTACAGCACGCTCCGGAACTAACGAGG
AATCCCAGCTGCGCCAGCGCGAGGCTGCCCTGGTTCTGCAATGGGTGGACCGCGCGCGCCACATTGATCCCTCCGGTCAA
GCAGTCATCGGCCATGGCGAGGAACGCAGCGCCCTGCTGCTGGAGAACGGTGACCGACTGAGGATCCCCACTCGCAACGA
TCTCGTGTTGATTGGCGGTGAAGTCCTGTTCCCGAACTCGTTCGTGTTCAAACCTGGTGCCAATGTCCAGCGTTACATTC
AGCAGGCAGGTGGATACACGCAGAACGCTGACAGCTCACGCGTCATCATCGCCCATCTTGACGGTACGTTTGTCGATGCG
CGCCAGGACGATACCGTGATGCCGGGAGACCAGATCATGATCCTGCCCAAGGTGGACTTCAAGACGATGCAGTTTGCCAA
GGACGTTTTTTCCATTCTCTACCAGATCGCCATCGCCGCGAAGGTGGCAATAGGTCTCTGA

Upstream 100 bases:

>100_bases
TACAACATCCTTCTCTCTCTGCTGGCCGCCGCAATGCTAACAGGGGTCCTGCACCTGCTTGTCGCCATCATTCGCGACCA
TCGCGATTGACTGACCTGAT

Downstream 100 bases:

>100_bases
CATGCTTCTTGTAAACCACGTAATGTCGAACGATGTCGCGAGCGGAATCTTCTCTGACATCATCTCGTACTACCGTAGCT
ACGCGCCGCCCGGCATCGAG

Product: polysaccharide export protein, polysialic acid transport protein kpsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 606

Protein sequence:

>606_residues
MKRIACCLVAASLLFSWAVHAQTPNVPLSMLPNALLGLTSSSDSSPSTDVATGQGAAAPAWQSGQPSISGLQSPMITGGT
PLPGTGQIQPPLPNIGAQAYIPAQRLGDYDANQKSEVFGTQLFTGAFARSAPSTFNPDYAVAIGDGVRVRIWGGFDFDSV
LTVDSQGMIFLPHCGPMRVAGIHNRDLQAAVTGALRKVFSSNVSIYASLASAQPVRVLVSGFVRHPGMYEGTGNDNVLRY
LDMAGGVDPDRGSFLDIQVKRGATVRYNVDLYRFLLNGDLPSTPLTDGDVIFVGQRKNTVMVGGLAASARRFEFNGTTTL
AQIAAAARPDATSTNVRVTRGSGTVQHVEYYPLSKTPDVTLMNGDLVEFTADKRPGTITVRVEGEHLGPQEYVVPYGTKL
GDLLGRVEMTSNSLPESTQLFRQSVKDRQAKMLDTSLTQLQNSVLTARSGTNEESQLRQREAALVLQWVDRARHIDPSGQ
AVIGHGEERSALLLENGDRLRIPTRNDLVLIGGEVLFPNSFVFKPGANVQRYIQQAGGYTQNADSSRVIIAHLDGTFVDA
RQDDTVMPGDQIMILPKVDFKTMQFAKDVFSILYQIAIAAKVAIGL

Sequences:

>Translated_606_residues
MKRIACCLVAASLLFSWAVHAQTPNVPLSMLPNALLGLTSSSDSSPSTDVATGQGAAAPAWQSGQPSISGLQSPMITGGT
PLPGTGQIQPPLPNIGAQAYIPAQRLGDYDANQKSEVFGTQLFTGAFARSAPSTFNPDYAVAIGDGVRVRIWGGFDFDSV
LTVDSQGMIFLPHCGPMRVAGIHNRDLQAAVTGALRKVFSSNVSIYASLASAQPVRVLVSGFVRHPGMYEGTGNDNVLRY
LDMAGGVDPDRGSFLDIQVKRGATVRYNVDLYRFLLNGDLPSTPLTDGDVIFVGQRKNTVMVGGLAASARRFEFNGTTTL
AQIAAAARPDATSTNVRVTRGSGTVQHVEYYPLSKTPDVTLMNGDLVEFTADKRPGTITVRVEGEHLGPQEYVVPYGTKL
GDLLGRVEMTSNSLPESTQLFRQSVKDRQAKMLDTSLTQLQNSVLTARSGTNEESQLRQREAALVLQWVDRARHIDPSGQ
AVIGHGEERSALLLENGDRLRIPTRNDLVLIGGEVLFPNSFVFKPGANVQRYIQQAGGYTQNADSSRVIIAHLDGTFVDA
RQDDTVMPGDQIMILPKVDFKTMQFAKDVFSILYQIAIAAKVAIGL
>Mature_606_residues
MKRIACCLVAASLLFSWAVHAQTPNVPLSMLPNALLGLTSSSDSSPSTDVATGQGAAAPAWQSGQPSISGLQSPMITGGT
PLPGTGQIQPPLPNIGAQAYIPAQRLGDYDANQKSEVFGTQLFTGAFARSAPSTFNPDYAVAIGDGVRVRIWGGFDFDSV
LTVDSQGMIFLPHCGPMRVAGIHNRDLQAAVTGALRKVFSSNVSIYASLASAQPVRVLVSGFVRHPGMYEGTGNDNVLRY
LDMAGGVDPDRGSFLDIQVKRGATVRYNVDLYRFLLNGDLPSTPLTDGDVIFVGQRKNTVMVGGLAASARRFEFNGTTTL
AQIAAAARPDATSTNVRVTRGSGTVQHVEYYPLSKTPDVTLMNGDLVEFTADKRPGTITVRVEGEHLGPQEYVVPYGTKL
GDLLGRVEMTSNSLPESTQLFRQSVKDRQAKMLDTSLTQLQNSVLTARSGTNEESQLRQREAALVLQWVDRARHIDPSGQ
AVIGHGEERSALLLENGDRLRIPTRNDLVLIGGEVLFPNSFVFKPGANVQRYIQQAGGYTQNADSSRVIIAHLDGTFVDA
RQDDTVMPGDQIMILPKVDFKTMQFAKDVFSILYQIAIAAKVAIGL

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 65155; Mature: 65155

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIACCLVAASLLFSWAVHAQTPNVPLSMLPNALLGLTSSSDSSPSTDVATGQGAAAPA
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCC
WQSGQPSISGLQSPMITGGTPLPGTGQIQPPLPNIGAQAYIPAQRLGDYDANQKSEVFGT
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCCCHHHHHH
QLFTGAFARSAPSTFNPDYAVAIGDGVRVRIWGGFDFDSVLTVDSQGMIFLPHCGPMRVA
HHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCEEEECCCCEEEEECCCCEEEE
GIHNRDLQAAVTGALRKVFSSNVSIYASLASAQPVRVLVSGFVRHPGMYEGTGNDNVLRY
CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEE
LDMAGGVDPDRGSFLDIQVKRGATVRYNVDLYRFLLNGDLPSTPLTDGDVIFVGQRKNTV
EHHHCCCCCCCCCEEEEEEECCCEEEEEHHEEEEEECCCCCCCCCCCCCEEEEECCCCEE
MVGGLAASARRFEFNGTTTLAQIAAAARPDATSTNVRVTRGSGTVQHVEYYPLSKTPDVT
EEEEEECCCEEEEECCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCEE
LMNGDLVEFTADKRPGTITVRVEGEHLGPQEYVVPYGTKLGDLLGRVEMTSNSLPESTQL
EECCCEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHEEEECCCCCCHHHHH
FRQSVKDRQAKMLDTSLTQLQNSVLTARSGTNEESQLRQREAALVLQWVDRARHIDPSGQ
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AVIGHGEERSALLLENGDRLRIPTRNDLVLIGGEVLFPNSFVFKPGANVQRYIQQAGGYT
EEEECCCCCCEEEEECCCEEECCCCCCEEEECCEEECCCCEEECCCCHHHHHHHHHCCCC
QNADSSRVIIAHLDGTFVDARQDDTVMPGDQIMILPKVDFKTMQFAKDVFSILYQIAIAA
CCCCCCEEEEEECCCEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
KVAIGL
HHCCCC
>Mature Secondary Structure
MKRIACCLVAASLLFSWAVHAQTPNVPLSMLPNALLGLTSSSDSSPSTDVATGQGAAAPA
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCC
WQSGQPSISGLQSPMITGGTPLPGTGQIQPPLPNIGAQAYIPAQRLGDYDANQKSEVFGT
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCCCHHHHHH
QLFTGAFARSAPSTFNPDYAVAIGDGVRVRIWGGFDFDSVLTVDSQGMIFLPHCGPMRVA
HHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCEEEECCCCEEEEECCCCEEEE
GIHNRDLQAAVTGALRKVFSSNVSIYASLASAQPVRVLVSGFVRHPGMYEGTGNDNVLRY
CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEE
LDMAGGVDPDRGSFLDIQVKRGATVRYNVDLYRFLLNGDLPSTPLTDGDVIFVGQRKNTV
EHHHCCCCCCCCCEEEEEEECCCEEEEEHHEEEEEECCCCCCCCCCCCCEEEEECCCCEE
MVGGLAASARRFEFNGTTTLAQIAAAARPDATSTNVRVTRGSGTVQHVEYYPLSKTPDVT
EEEEEECCCEEEEECCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCEE
LMNGDLVEFTADKRPGTITVRVEGEHLGPQEYVVPYGTKLGDLLGRVEMTSNSLPESTQL
EECCCEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHEEEECCCCCCHHHHH
FRQSVKDRQAKMLDTSLTQLQNSVLTARSGTNEESQLRQREAALVLQWVDRARHIDPSGQ
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AVIGHGEERSALLLENGDRLRIPTRNDLVLIGGEVLFPNSFVFKPGANVQRYIQQAGGYT
EEEECCCCCCEEEEECCCEEECCCCCCEEEECCEEECCCCEEECCCCHHHHHHHHHCCCC
QNADSSRVIIAHLDGTFVDARQDDTVMPGDQIMILPKVDFKTMQFAKDVFSILYQIAIAA
CCCCCCEEEEEECCCEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
KVAIGL
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]