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The map label for this gene is yecD [H]

Identifier: 94314578

GI number: 94314578

Start: 2418078

End: 2418611

Strand: Reverse

Name: yecD [H]

Synonym: Rmet_5659

Alternate gene names: 94314578

Gene position: 2418611-2418078 (Counterclockwise)

Preceding gene: 94314579

Following gene: 94314577

Centisome position: 93.74

GC content: 62.55

Gene sequence:

>534_bases
ATGACAGCGGCCCTACTCGTCATCGATGTCCAGCAAGGCCTGTGCGAAGGCGACGAGGTCCCGCTCGCTCACCACGAGAT
CATCGACCGCATCAACGATGTTGCCGGCAAGGCACGCACCGCGCGCGTGCCCGTTATATTCATCCAGCATGAATCGGCGG
ACGACTACCTGCCGTATGGCTCAGCGCGCTGGCATCTCGCGGATGGGCTGACCGCGCTGGATAGCGACCTGCGCGTCCGC
AAGACCACGCCGGATTCTTTCTTCGGGACGACACTCGAGGCGACGCTGAAGGAGCACGGGGTGACGCACCTGGTCATCTG
CGGCATGCATACGGAGTACTGCGTCGATACCACCACGCGGCGTGCGCTGGCGCTGGGCTATCCGGTGAGGCTGATCGCAG
ATGGTCACACAACTGTTTCGAATGCGGCCTTGTCTGCAGGGCAGATCATTCACCATCACAACCTCACGCTGACGGGTATC
AGCAGTTTCGGCCCGCGCGTACGTGCGGTGCCAGCGGCGGACATCACGTTCTGA

Upstream 100 bases:

>100_bases
CTGACGGTACCCACTAAGGTGGGGGGGCGGTCGGGCAGCACCGGTCCCGTTCGTTGTTTCATGGCATGATTGAGCGATCA
AGGTCTCCGACTTATCTGCC

Downstream 100 bases:

>100_bases
TTCGTCAGAGCCATTGTCAGCCGCTCTCACAGAATCCCTCGCGCCCCCGTGTCGTTCTGCAACCAACTATCCCTGATCAA
CCCCGCGGTCTCGCTGATCT

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MTAALLVIDVQQGLCEGDEVPLAHHEIIDRINDVAGKARTARVPVIFIQHESADDYLPYGSARWHLADGLTALDSDLRVR
KTTPDSFFGTTLEATLKEHGVTHLVICGMHTEYCVDTTTRRALALGYPVRLIADGHTTVSNAALSAGQIIHHHNLTLTGI
SSFGPRVRAVPAADITF

Sequences:

>Translated_177_residues
MTAALLVIDVQQGLCEGDEVPLAHHEIIDRINDVAGKARTARVPVIFIQHESADDYLPYGSARWHLADGLTALDSDLRVR
KTTPDSFFGTTLEATLKEHGVTHLVICGMHTEYCVDTTTRRALALGYPVRLIADGHTTVSNAALSAGQIIHHHNLTLTGI
SSFGPRVRAVPAADITF
>Mature_176_residues
TAALLVIDVQQGLCEGDEVPLAHHEIIDRINDVAGKARTARVPVIFIQHESADDYLPYGSARWHLADGLTALDSDLRVRK
TTPDSFFGTTLEATLKEHGVTHLVICGMHTEYCVDTTTRRALALGYPVRLIADGHTTVSNAALSAGQIIHHHNLTLTGIS
SFGPRVRAVPAADITF

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=185, Percent_Identity=28.6486486486486, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 19173; Mature: 19042

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAALLVIDVQQGLCEGDEVPLAHHEIIDRINDVAGKARTARVPVIFIQHESADDYLPYG
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCEEEEEECCCCCCCCCC
SARWHLADGLTALDSDLRVRKTTPDSFFGTTLEATLKEHGVTHLVICGMHTEYCVDTTTR
CCEEEECCCCEECCCCCEEEECCCCCHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCH
RALALGYPVRLIADGHTTVSNAALSAGQIIHHHNLTLTGISSFGPRVRAVPAADITF
HEEEECCCEEEEECCCCCHHHHHHCCCEEEEECCEEEEEECCCCCCEEECCCCCCCC
>Mature Secondary Structure 
TAALLVIDVQQGLCEGDEVPLAHHEIIDRINDVAGKARTARVPVIFIQHESADDYLPYG
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCEEEEEECCCCCCCCCC
SARWHLADGLTALDSDLRVRKTTPDSFFGTTLEATLKEHGVTHLVICGMHTEYCVDTTTR
CCEEEECCCCEECCCCCEEEECCCCCHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCH
RALALGYPVRLIADGHTTVSNAALSAGQIIHHHNLTLTGISSFGPRVRAVPAADITF
HEEEECCCEEEEECCCCCHHHHHHCCCEEEEECCEEEEEECCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]