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The map label for this gene is ydaM [H]

Identifier: 94314577

GI number: 94314577

Start: 2416842

End: 2418029

Strand: Reverse

Name: ydaM [H]

Synonym: Rmet_5658

Alternate gene names: 94314577

Gene position: 2418029-2416842 (Counterclockwise)

Preceding gene: 94314578

Following gene: 291481597

Centisome position: 93.72

GC content: 64.06

Gene sequence:

>1188_bases
GTGTCGTTCTGCAACCAACTATCCCTGATCAACCCCGCGGTCTCGCTGATCTTCGCTGGCTGCTTCCTCGTGGTCTGGCG
GCAGCTCCGCAGCCAGCATCTGCTGGCGTTCGGCGTGTCCTTTGCGCTCTATGCCGTGGCGGTGGCCATACAGGTCCTGT
CTCCGCCGAGCGATGCTGTCTGGACGACGCTCGTCGCCGCGCCGTTCTACATCGGCAGCACGATGCTGATTGCGTGCGGA
TTGCTGTGGCGCGCCCATGTCAAATCCACCACCGCACTGGCCGCCTGTTCGGGGGTGGCCATTGTCGAGTTCTCGCTGCT
CGCCTACTTCCATTTCGCCGTGCCTGACCTGACGGCGCGGATATACGTACACAACATTGGCGCCGCGCTGATCTTCGGCA
TTGCCCTGGCTCAGCTTGGTGGCTTGCGGCGGGGCAGCGTGGCGGATCGGGCGATCTACTGGGTGTTCGTCGCCTTTACC
GTGAACCTCGGCCTGCGGCTGCTGCTGAGCACGAGCGCACCCCCGAACACCGACGAATGTGGCAGGGCGTTTTCAAGCTA
TTGGACGTATTTCCAGGTAGGCCAGACGCTCTTTAACGTCTTCTTCAGCCTGGTGCTGCTGGGCTCCGAGATTCACGCGC
TGATCGAACGGATCCAGCACGAGCGGGATACGGATGCGCTGACGCGGCTTCACAACCGGAGAAGCTTCGAGGAAATCGCG
CGCGAGACGATTTCGCGGGCCAATGGCGGGGTGCCCGGACTGATCCTGGTGGACCTTGATTTCTTCAAGCTCATCAACGA
CAACCACGGTCACGCCAGTGGCGACGCGATACTCGTCGAGTTCGCGCGGATCGTCAGGCGCGTGGTGGGCGCGCGGGGGA
TTGCCGGCCGGCTTGGGGGCGAGGAGTTCGCGGTGCTATTGCCGCGGACGACCGGGGAAGAGGCGATCCATATCGCCGAA
GAGATCCGGGCGACGCTCGAGCGCGCGCGATTCGAGACGCTGCCGGATAGCCCGCGTGTGACGGCCAGCTTTGGTGTGGC
GGTGTGGCAACCGCCGGAGTCGCTCGATGCGCTGATGTCGCGTGCCGACGGGCTGCTCTATACCGCAAAGCGCAGCGGTC
GCAATCGCGTGCACCACGCGCACGAACAGACGTCGATGCAGGAAGTGGGCAGCGAACGGCTGCCCTGA

Upstream 100 bases:

>100_bases
CAGTTTCGGCCCGCGCGTACGTGCGGTGCCAGCGGCGGACATCACGTTCTGATTCGTCAGAGCCATTGTCAGCCGCTCTC
ACAGAATCCCTCGCGCCCCC

Downstream 100 bases:

>100_bases
TACCAGTGCGCGGCGGCTGCGCGCTCAGCCGAACTTGCGCAGCGCGTCCAGCGCGAGTCCCGAACCGATACCGCCGAACA
GATCACCTTCCACGCGGCGC

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MSFCNQLSLINPAVSLIFAGCFLVVWRQLRSQHLLAFGVSFALYAVAVAIQVLSPPSDAVWTTLVAAPFYIGSTMLIACG
LLWRAHVKSTTALAACSGVAIVEFSLLAYFHFAVPDLTARIYVHNIGAALIFGIALAQLGGLRRGSVADRAIYWVFVAFT
VNLGLRLLLSTSAPPNTDECGRAFSSYWTYFQVGQTLFNVFFSLVLLGSEIHALIERIQHERDTDALTRLHNRRSFEEIA
RETISRANGGVPGLILVDLDFFKLINDNHGHASGDAILVEFARIVRRVVGARGIAGRLGGEEFAVLLPRTTGEEAIHIAE
EIRATLERARFETLPDSPRVTASFGVAVWQPPESLDALMSRADGLLYTAKRSGRNRVHHAHEQTSMQEVGSERLP

Sequences:

>Translated_395_residues
MSFCNQLSLINPAVSLIFAGCFLVVWRQLRSQHLLAFGVSFALYAVAVAIQVLSPPSDAVWTTLVAAPFYIGSTMLIACG
LLWRAHVKSTTALAACSGVAIVEFSLLAYFHFAVPDLTARIYVHNIGAALIFGIALAQLGGLRRGSVADRAIYWVFVAFT
VNLGLRLLLSTSAPPNTDECGRAFSSYWTYFQVGQTLFNVFFSLVLLGSEIHALIERIQHERDTDALTRLHNRRSFEEIA
RETISRANGGVPGLILVDLDFFKLINDNHGHASGDAILVEFARIVRRVVGARGIAGRLGGEEFAVLLPRTTGEEAIHIAE
EIRATLERARFETLPDSPRVTASFGVAVWQPPESLDALMSRADGLLYTAKRSGRNRVHHAHEQTSMQEVGSERLP
>Mature_394_residues
SFCNQLSLINPAVSLIFAGCFLVVWRQLRSQHLLAFGVSFALYAVAVAIQVLSPPSDAVWTTLVAAPFYIGSTMLIACGL
LWRAHVKSTTALAACSGVAIVEFSLLAYFHFAVPDLTARIYVHNIGAALIFGIALAQLGGLRRGSVADRAIYWVFVAFTV
NLGLRLLLSTSAPPNTDECGRAFSSYWTYFQVGQTLFNVFFSLVLLGSEIHALIERIQHERDTDALTRLHNRRSFEEIAR
ETISRANGGVPGLILVDLDFFKLINDNHGHASGDAILVEFARIVRRVVGARGIAGRLGGEEFAVLLPRTTGEEAIHIAEE
IRATLERARFETLPDSPRVTASFGVAVWQPPESLDALMSRADGLLYTAKRSGRNRVHHAHEQTSMQEVGSERLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=40.3508771929825, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=35.0877192982456, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=39.0804597701149, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=35.4651162790698, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=34.9693251533742, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=35.5029585798817, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=34.1614906832298, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=228, Percent_Identity=28.9473684210526, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=160, Percent_Identity=33.125, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=33.7662337662338, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=30.7262569832402, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=184, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=32.6797385620915, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 43301; Mature: 43170

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFCNQLSLINPAVSLIFAGCFLVVWRQLRSQHLLAFGVSFALYAVAVAIQVLSPPSDAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
WTTLVAAPFYIGSTMLIACGLLWRAHVKSTTALAACSGVAIVEFSLLAYFHFAVPDLTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHH
IYVHNIGAALIFGIALAQLGGLRRGSVADRAIYWVFVAFTVNLGLRLLLSTSAPPNTDEC
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHH
GRAFSSYWTYFQVGQTLFNVFFSLVLLGSEIHALIERIQHERDTDALTRLHNRRSFEEIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
RETISRANGGVPGLILVDLDFFKLINDNHGHASGDAILVEFARIVRRVVGARGIAGRLGG
HHHHHHCCCCCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCC
EEFAVLLPRTTGEEAIHIAEEIRATLERARFETLPDSPRVTASFGVAVWQPPESLDALMS
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEECCHHHHHHHHH
RADGLLYTAKRSGRNRVHHAHEQTSMQEVGSERLP
HCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SFCNQLSLINPAVSLIFAGCFLVVWRQLRSQHLLAFGVSFALYAVAVAIQVLSPPSDAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
WTTLVAAPFYIGSTMLIACGLLWRAHVKSTTALAACSGVAIVEFSLLAYFHFAVPDLTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHH
IYVHNIGAALIFGIALAQLGGLRRGSVADRAIYWVFVAFTVNLGLRLLLSTSAPPNTDEC
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHH
GRAFSSYWTYFQVGQTLFNVFFSLVLLGSEIHALIERIQHERDTDALTRLHNRRSFEEIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
RETISRANGGVPGLILVDLDFFKLINDNHGHASGDAILVEFARIVRRVVGARGIAGRLGG
HHHHHHCCCCCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCC
EEFAVLLPRTTGEEAIHIAEEIRATLERARFETLPDSPRVTASFGVAVWQPPESLDALMS
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEECCHHHHHHHHH
RADGLLYTAKRSGRNRVHHAHEQTSMQEVGSERLP
HCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]