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The map label for this gene is ymdC [H]

Identifier: 94314507

GI number: 94314507

Start: 2340670

End: 2342274

Strand: Reverse

Name: ymdC [H]

Synonym: Rmet_5588

Alternate gene names: 94314507

Gene position: 2342274-2340670 (Counterclockwise)

Preceding gene: 94314508

Following gene: 94314504

Centisome position: 90.78

GC content: 64.8

Gene sequence:

>1605_bases
ATGGCGCAGGCGTTGCAACAACGGAGTGCGAGCGTTGGCCCCCGATTTCTGCTGGCCTGTCTGTCGGCCTGCATCCTGGT
ACTGGCAGGGTGCGCCAGTTTGCCAGCGCATCCTGACCGCACGCCGAGCTACGCGTCGACCGATACCAGCGATACGTTGC
TGGCCAGTTCCCTGGCACCACGGCTGGCGCGGAATCCGGGTCAATCGATCTTCTATCCGCTGGGTTCTGGGCCCGATGCG
CTGGCGGTCCGCATGGCGTTGGCGCGCGCGGCGCGCAAGACGCTCGATCTCCAGTACTACTTATTTGATGCAGATACCAC
GGGCAGCGCCCTGCTTGGCGAGTTGATCGATGCCGCCGACCGTGGCGTGCGGGTGCGTCTGCTGATCGACGACCTGCATT
CCACCAATCAGGACAAGCTCTGGGCGGCGCTCGACGCCCATCCGAACATCGAGACCCGGTTGTTCAACCCGTTTGCCAAC
CGCTCCGCGCGCTGGGCCGAGATGATGGTCGATTTCGGCCGCCTGGACCGGCGCATGCACAACAAGCTGATGGTGGCGGA
CAACCTCGTGGGCGTGGTCGGTGGCCGCAATATCGGAGACGCGTATTTCTCGGCCCGACCCGACGTCGATTTCAGCGACC
TGGATGTGATGGTCGCCGGGCCCGTCGTGCAGGCCGCCAGCAAGGTGTTCGACCAGTACTGGAACAGCGAGAGCGCGTAT
CCGGTGGCCGCGCTGGTGCCCGAGGGCAAGGAGGCACCTGAGGAACTGCGACGCTTTCGCAAGGAAGTCGAGGCAAAGGG
GGACGTGGCTCGTGCCAGTCCCTTCGTGCAGGAACTGCTGGACTCGGGGCTGGCGCGCGGCATCGAAGTGGGTCATCTGC
CGGGTCACGTCGGCAGCGCGCGCGTGATTGCCGACTCGCCTGACAAGATCGAGAACGATCCCGACGATGCGTCGACACAC
GCAATTCCCCGCCTGCGGGCGCTGATGGAGGCGGCGCAGACCGAACTGGTGCTGATCTCGCCGTACTTTGTGCCAGACGA
TGACACCGAGAAATGGTTGGCCGCCATCGCCAAACGTGGCGTCAAGGTGCGGGTGCTGACCAACTCGTTTGCGGCCACGG
ATGTTTCCGCAGTCCATGCGGGCTACGCGCCACGCCGTCTGGCGCTGCTCCACGCCGGCATCGAACTGTACGAACTCAAG
CCCACCGCCAGTACCGGATTGACGCAAGATCGTGGCAGACACGCTCGCACCTTCGCATCGAGCCGCGCAACCCTCCATGC
CAAGGCCTATGTCGTCGACCGGCGGTTCCTGTTCGTGGGCTCCCCGAACCTGGACCCGCGATCGAGCCGGCTCAATACCG
AGATGGGGGTCGTGCTCGACAGCCCCACGCTGGCTGCCTGGTTCGTGTCCGACGTGGACAAGCGGCTGCCCGAGATCGCG
TGGCGCATTGGGGTGCGTACCGATGCGGCGGGTCAGGAAGGCCTGACGTGGACAACGATGGAGCAGGGCAAGGAAGTCAC
CACCGACAAGGAGCCCGGCATGAGCGTGTGGCAGCACATCGGCATCGACTTTCTGGGACTCCTGCCGCTGGAGGATGAGC
TGTAG

Upstream 100 bases:

>100_bases
CGCCAGGCTGCCGGTAGCGCAGCAGATCGTGCGTGGCTACTATCGCGAGCCGGTGCGGAAGAACGTAGCGCAGCAGTGAA
CCAACCACCTGGGGGCCGCC

Downstream 100 bases:

>100_bases
CCGAGGTGATCCGTGGTGTGTCAGGCGGTGGCGTCGGGGGGCTGGAGCAATTGCAGCAGATGCTCCTGAAGCTTCGAAAG
CTCCGGCGCGATACCGCCCG

Product: putative phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MAQALQQRSASVGPRFLLACLSACILVLAGCASLPAHPDRTPSYASTDTSDTLLASSLAPRLARNPGQSIFYPLGSGPDA
LAVRMALARAARKTLDLQYYLFDADTTGSALLGELIDAADRGVRVRLLIDDLHSTNQDKLWAALDAHPNIETRLFNPFAN
RSARWAEMMVDFGRLDRRMHNKLMVADNLVGVVGGRNIGDAYFSARPDVDFSDLDVMVAGPVVQAASKVFDQYWNSESAY
PVAALVPEGKEAPEELRRFRKEVEAKGDVARASPFVQELLDSGLARGIEVGHLPGHVGSARVIADSPDKIENDPDDASTH
AIPRLRALMEAAQTELVLISPYFVPDDDTEKWLAAIAKRGVKVRVLTNSFAATDVSAVHAGYAPRRLALLHAGIELYELK
PTASTGLTQDRGRHARTFASSRATLHAKAYVVDRRFLFVGSPNLDPRSSRLNTEMGVVLDSPTLAAWFVSDVDKRLPEIA
WRIGVRTDAAGQEGLTWTTMEQGKEVTTDKEPGMSVWQHIGIDFLGLLPLEDEL

Sequences:

>Translated_534_residues
MAQALQQRSASVGPRFLLACLSACILVLAGCASLPAHPDRTPSYASTDTSDTLLASSLAPRLARNPGQSIFYPLGSGPDA
LAVRMALARAARKTLDLQYYLFDADTTGSALLGELIDAADRGVRVRLLIDDLHSTNQDKLWAALDAHPNIETRLFNPFAN
RSARWAEMMVDFGRLDRRMHNKLMVADNLVGVVGGRNIGDAYFSARPDVDFSDLDVMVAGPVVQAASKVFDQYWNSESAY
PVAALVPEGKEAPEELRRFRKEVEAKGDVARASPFVQELLDSGLARGIEVGHLPGHVGSARVIADSPDKIENDPDDASTH
AIPRLRALMEAAQTELVLISPYFVPDDDTEKWLAAIAKRGVKVRVLTNSFAATDVSAVHAGYAPRRLALLHAGIELYELK
PTASTGLTQDRGRHARTFASSRATLHAKAYVVDRRFLFVGSPNLDPRSSRLNTEMGVVLDSPTLAAWFVSDVDKRLPEIA
WRIGVRTDAAGQEGLTWTTMEQGKEVTTDKEPGMSVWQHIGIDFLGLLPLEDEL
>Mature_533_residues
AQALQQRSASVGPRFLLACLSACILVLAGCASLPAHPDRTPSYASTDTSDTLLASSLAPRLARNPGQSIFYPLGSGPDAL
AVRMALARAARKTLDLQYYLFDADTTGSALLGELIDAADRGVRVRLLIDDLHSTNQDKLWAALDAHPNIETRLFNPFANR
SARWAEMMVDFGRLDRRMHNKLMVADNLVGVVGGRNIGDAYFSARPDVDFSDLDVMVAGPVVQAASKVFDQYWNSESAYP
VAALVPEGKEAPEELRRFRKEVEAKGDVARASPFVQELLDSGLARGIEVGHLPGHVGSARVIADSPDKIENDPDDASTHA
IPRLRALMEAAQTELVLISPYFVPDDDTEKWLAAIAKRGVKVRVLTNSFAATDVSAVHAGYAPRRLALLHAGIELYELKP
TASTGLTQDRGRHARTFASSRATLHAKAYVVDRRFLFVGSPNLDPRSSRLNTEMGVVLDSPTLAAWFVSDVDKRLPEIAW
RIGVRTDAAGQEGLTWTTMEQGKEVTTDKEPGMSVWQHIGIDFLGLLPLEDEL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=498, Percent_Identity=41.1646586345382, Blast_Score=318, Evalue=8e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58186; Mature: 58054

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQALQQRSASVGPRFLLACLSACILVLAGCASLPAHPDRTPSYASTDTSDTLLASSLAP
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RLARNPGQSIFYPLGSGPDALAVRMALARAARKTLDLQYYLFDADTTGSALLGELIDAAD
HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHC
RGVRVRLLIDDLHSTNQDKLWAALDAHPNIETRLFNPFANRSARWAEMMVDFGRLDRRMH
CCEEEEEEEECCCCCCCCCEEEEECCCCCCCCEEECHHHCCCHHHHHHHHHHHHHHHHHH
NKLMVADNLVGVVGGRNIGDAYFSARPDVDFSDLDVMVAGPVVQAASKVFDQYWNSESAY
CCEEECCCEEEECCCCCCCCHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCC
PVAALVPEGKEAPEELRRFRKEVEAKGDVARASPFVQELLDSGLARGIEVGHLPGHVGSA
EEEEECCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCEECCCCCCCCCC
RVIADSPDKIENDPDDASTHAIPRLRALMEAAQTELVLISPYFVPDDDTEKWLAAIAKRG
EEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECEECCCCCHHHHHHHHHHCC
VKVRVLTNSFAATDVSAVHAGYAPRRLALLHAGIELYELKPTASTGLTQDRGRHARTFAS
CEEEEEECCCCHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCCCHHCCCHHHHHHH
SRATLHAKAYVVDRRFLFVGSPNLDPRSSRLNTEMGVVLDSPTLAAWFVSDVDKRLPEIA
CCCEEEEEEEEEEEEEEEEECCCCCCCHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
WRIGVRTDAAGQEGLTWTTMEQGKEVTTDKEPGMSVWQHIGIDFLGLLPLEDEL
HHHCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure 
AQALQQRSASVGPRFLLACLSACILVLAGCASLPAHPDRTPSYASTDTSDTLLASSLAP
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RLARNPGQSIFYPLGSGPDALAVRMALARAARKTLDLQYYLFDADTTGSALLGELIDAAD
HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHC
RGVRVRLLIDDLHSTNQDKLWAALDAHPNIETRLFNPFANRSARWAEMMVDFGRLDRRMH
CCEEEEEEEECCCCCCCCCEEEEECCCCCCCCEEECHHHCCCHHHHHHHHHHHHHHHHHH
NKLMVADNLVGVVGGRNIGDAYFSARPDVDFSDLDVMVAGPVVQAASKVFDQYWNSESAY
CCEEECCCEEEECCCCCCCCHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCC
PVAALVPEGKEAPEELRRFRKEVEAKGDVARASPFVQELLDSGLARGIEVGHLPGHVGSA
EEEEECCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCEECCCCCCCCCC
RVIADSPDKIENDPDDASTHAIPRLRALMEAAQTELVLISPYFVPDDDTEKWLAAIAKRG
EEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECEECCCCCHHHHHHHHHHCC
VKVRVLTNSFAATDVSAVHAGYAPRRLALLHAGIELYELKPTASTGLTQDRGRHARTFAS
CEEEEEECCCCHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCCCHHCCCHHHHHHH
SRATLHAKAYVVDRRFLFVGSPNLDPRSSRLNTEMGVVLDSPTLAAWFVSDVDKRLPEIA
CCCEEEEEEEEEEEEEEEEECCCCCCCHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
WRIGVRTDAAGQEGLTWTTMEQGKEVTTDKEPGMSVWQHIGIDFLGLLPLEDEL
HHHCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]