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The map label for this gene is yhjC [C]

Identifier: 94314490

GI number: 94314490

Start: 2324429

End: 2325427

Strand: Reverse

Name: yhjC [C]

Synonym: Rmet_5571

Alternate gene names: 94314490

Gene position: 2325427-2324429 (Counterclockwise)

Preceding gene: 94314491

Following gene: 94314487

Centisome position: 90.13

GC content: 64.86

Gene sequence:

>999_bases
ATGAAATCGATCGACTGGAAGGACTGGGAAATCTTCTGCCGCGTGGTGGAAGGGGGCGGCTTCACACAGGGGGCCGAACT
GGCCGAAGTCCCGAAGTCATCGGCGAGCGCCGCGGTGGCGCGGCTGGAAGGGCAACTCGGCGTGCGATTGTTCGAGCGGA
CCACGCGTCGGGTGCGCGTCACCCAGCGCGGCCAGCAACTGTATGATCGCGTGGCGCCACTGTTCGGCGAACTGCGCGAG
ATCAGCGCCGAAGCGGCGTCCGTCAGCGAAGAAGTCAGCGGCACGATCCGCATCGCCACACCCTATGAAGTCGGTTCGCA
GCACCTTTCGCCGACGGTGAACCGGCTGCTCAAGCTGCATCCCTCGCTGCGCGTGCAACTCGATGTGAGCTGGGACCAGC
CCGACCTGATCCGCCACGGCTACGACCTGGCCTTCGTCATGACAGACACGGGGTTGAGCGATAGCTCGTTTGCCAGCAAG
CGGGTGGTGCTGATCGAACGCGCGTTCTATGCCGCGCCGTCCCTGATTCGCGAGCGCGGACTGCCGCGCACGCCGCAGGA
TTTGCAAGGCTGGCCCACGGTCGGCAATCTTGACGATACGCGTTGGGAATTCCTGCGCGATGGGGTGGAAACCTTCGCCA
TGGATGTGGAACCCCGCATCTGCACGCACAACGCGGAAGTGCGGTTCAATGCCGCGGTGGATGGCCTGGGCGTGACACGC
CTGTCGCCGCGATTTGTACGCGAGGCACTTGTGGAGGGCAAGCTGGTGCGCGTGCTGCCTGGCTACGCATCGTCCCCGCT
GAAGGTCTATGTGCTGATGCCCGCCCGCAAGCTGATGCCGGCCAGCGTGCGCGCATTTCTGGATGCGCTCGAGGAAACGC
TCGGTGTGCCAGAAACGCGTCGGCCCGGAGCGCGCGTGACGGCCGCAACGCGCATTGAGGAGAGCGCGGAAGATCAGAAC
GATGACGATGGCGAGCCCACCGTCATCACCCTCGACTGA

Upstream 100 bases:

>100_bases
CCACACTATGAGCATGGACTCCATCATTGTTCGCGGTGTGGGACAATCGCGCCCCATCGGGTAAGGGTTTTCCCCGGTGT
TCGCGTGAACAAGGTGCGCA

Downstream 100 bases:

>100_bases
GCGTCAGAAAGGCTGGTCGCCGCTGCGGGCGTCGAAGCCCAGCGTGTCGGCGATTTCCAGCATTTCGTCGTCGTCCTCAC
TGCGCGTGATCCAGCCGGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKSIDWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGVRLFERTTRRVRVTQRGQQLYDRVAPLFGELRE
ISAEAASVSEEVSGTIRIATPYEVGSQHLSPTVNRLLKLHPSLRVQLDVSWDQPDLIRHGYDLAFVMTDTGLSDSSFASK
RVVLIERAFYAAPSLIRERGLPRTPQDLQGWPTVGNLDDTRWEFLRDGVETFAMDVEPRICTHNAEVRFNAAVDGLGVTR
LSPRFVREALVEGKLVRVLPGYASSPLKVYVLMPARKLMPASVRAFLDALEETLGVPETRRPGARVTAATRIEESAEDQN
DDDGEPTVITLD

Sequences:

>Translated_332_residues
MKSIDWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGVRLFERTTRRVRVTQRGQQLYDRVAPLFGELRE
ISAEAASVSEEVSGTIRIATPYEVGSQHLSPTVNRLLKLHPSLRVQLDVSWDQPDLIRHGYDLAFVMTDTGLSDSSFASK
RVVLIERAFYAAPSLIRERGLPRTPQDLQGWPTVGNLDDTRWEFLRDGVETFAMDVEPRICTHNAEVRFNAAVDGLGVTR
LSPRFVREALVEGKLVRVLPGYASSPLKVYVLMPARKLMPASVRAFLDALEETLGVPETRRPGARVTAATRIEESAEDQN
DDDGEPTVITLD
>Mature_332_residues
MKSIDWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGVRLFERTTRRVRVTQRGQQLYDRVAPLFGELRE
ISAEAASVSEEVSGTIRIATPYEVGSQHLSPTVNRLLKLHPSLRVQLDVSWDQPDLIRHGYDLAFVMTDTGLSDSSFASK
RVVLIERAFYAAPSLIRERGLPRTPQDLQGWPTVGNLDDTRWEFLRDGVETFAMDVEPRICTHNAEVRFNAAVDGLGVTR
LSPRFVREALVEGKLVRVLPGYASSPLKVYVLMPARKLMPASVRAFLDALEETLGVPETRRPGARVTAATRIEESAEDQN
DDDGEPTVITLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=29.0657439446367, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=27.681660899654, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=27.4247491638796, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=26.962457337884, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789440, Length=264, Percent_Identity=25.3787878787879, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787128, Length=298, Percent_Identity=23.489932885906, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=26.7796610169492, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788481, Length=299, Percent_Identity=27.7591973244147, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=25.4295532646048, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36860; Mature: 36860

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIDWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGVRLFERTTRRVRV
CCCCCCCCCEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQRGQQLYDRVAPLFGELREISAEAASVSEEVSGTIRIATPYEVGSQHLSPTVNRLLKLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCHHCCHHHHHHHHCC
PSLRVQLDVSWDQPDLIRHGYDLAFVMTDTGLSDSSFASKRVVLIERAFYAAPSLIRERG
CCEEEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCC
LPRTPQDLQGWPTVGNLDDTRWEFLRDGVETFAMDVEPRICTHNAEVRFNAAVDGLGVTR
CCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEEECCCCCCC
LSPRFVREALVEGKLVRVLPGYASSPLKVYVLMPARKLMPASVRAFLDALEETLGVPETR
CCHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCHHHCHHHHHHHHHHHHHHHCCCCCC
RPGARVTAATRIEESAEDQNDDDGEPTVITLD
CCCCCEEHHHHHHHHHCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MKSIDWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGVRLFERTTRRVRV
CCCCCCCCCEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQRGQQLYDRVAPLFGELREISAEAASVSEEVSGTIRIATPYEVGSQHLSPTVNRLLKLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCHHCCHHHHHHHHCC
PSLRVQLDVSWDQPDLIRHGYDLAFVMTDTGLSDSSFASKRVVLIERAFYAAPSLIRERG
CCEEEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCC
LPRTPQDLQGWPTVGNLDDTRWEFLRDGVETFAMDVEPRICTHNAEVRFNAAVDGLGVTR
CCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEEECCCCCCC
LSPRFVREALVEGKLVRVLPGYASSPLKVYVLMPARKLMPASVRAFLDALEETLGVPETR
CCHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCHHHCHHHHHHHHHHHHHHHCCCCCC
RPGARVTAATRIEESAEDQNDDDGEPTVITLD
CCCCCEEHHHHHHHHHCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]