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The map label for this gene is yfdE [H]

Identifier: 94314475

GI number: 94314475

Start: 2303943

End: 2305052

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_5556

Alternate gene names: 94314475

Gene position: 2303943-2305052 (Clockwise)

Preceding gene: 94314474

Following gene: 94314476

Centisome position: 89.3

GC content: 58.56

Gene sequence:

>1110_bases
ATGCTGAAACCTGAGCACGGTCGTGGACCTCTCAATGGAGTGCGCGTTGTCGAGTTTGCAGGGCTAGGACCTGCACCGTT
TGCCTGCATGATGCTGGCCGACATGGGTGCAGACGTTGTCCGCATTGACCGGCCGGGGACGAAAGCGCGTGACAACGATC
TAGTTGGCCGCGGCAGGCGCACGGTGCTGCTGGACCTCAAAGCCGAAGGTGATATCGAACGAGCTCGCTCACTATTGGCA
CAGGCAGACATCCTCGTTGAAGGCTTCCGTCCTGGTGTAATGGAACGCCTCGGCTTGGGGCCCGATACGCTGTTGAATAT
CAATCCCCGCCTGGTGTACGGACGAATGACGGGCTGGGGCCAGGACGGCCCCCTCTCCCTGGCTGCCGGACACGACATCA
ACTACATAGCACTTACCGGGGCACTTGCCGCGATCGGTGATGGCGACGGACTGCCAGTGCCGCCGCTTAACCTGGTCGGC
GACTACGGTGGAGGAAGTCTATACCTCCTCGTTGGCATCCTCGCAGCACTGCATAACTCTCGCGAGACCGGGCACGGACA
AGTCATAGACGCTGCAATCTGCGACGGTGCTATGTCACTAATGACATTCGCGCAGAGTCAACGGCTCAACGGCTTGTTTA
AGGAGCAACGCAGTAGCAACATGCTCGATGGCGGCGCACCTTACTACACCACGTATCGCACGAAAGACGACAAGGTGGTC
TGCGTGGGCGCGATTGAACCGCAATTCTTCGCGCTTTTGTGCGAGAAGCTCGGCGTAAAACCGGAACTGCGTGATGCGCA
AAATGACCGCAAGCGTTGGCCAATATTGCGAGCCGAGCTGGAGCAGATATTCAAGGGCCAAACACAAGCAGAGTGGACTG
CGTTGCTCGAAGGGACAGATTCCTGCTTCTCACCTGTGATCTCACTTGGCGAGGTTTCATCTCATCCGCATATGGCCGCC
CGCGGAGCTCTGACCGAGGTTGACGGCGTAGCCTGCCCGGCACCTGCCCCTAGGTTCTCTCGGACTCCCACAGTCATCTC
CGACCTCGATAGGCTGCTGACGACGGCAGAAGACATCTCGCGACAGTGGGAATCCACAAACAACAGGTAA

Upstream 100 bases:

>100_bases
CCGGCCATCGTGTTCGCTTACCGCGCTGCGCTTCATGCACAACGGAAAACGTTGACATCGTCCCAAAAAGAAGCGCGAGT
CTATGAGGAGCAATAGAGCA

Downstream 100 bases:

>100_bases
CCCCTGCCCTCTTTCAGAGCGCAGAACATGGAGAAAAGATGAGCCTACGATATGGCAGCGTCCTCTACGCGGTAAAAGGT
AGCGTGGCAATCGTGACGTT

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MLKPEHGRGPLNGVRVVEFAGLGPAPFACMMLADMGADVVRIDRPGTKARDNDLVGRGRRTVLLDLKAEGDIERARSLLA
QADILVEGFRPGVMERLGLGPDTLLNINPRLVYGRMTGWGQDGPLSLAAGHDINYIALTGALAAIGDGDGLPVPPLNLVG
DYGGGSLYLLVGILAALHNSRETGHGQVIDAAICDGAMSLMTFAQSQRLNGLFKEQRSSNMLDGGAPYYTTYRTKDDKVV
CVGAIEPQFFALLCEKLGVKPELRDAQNDRKRWPILRAELEQIFKGQTQAEWTALLEGTDSCFSPVISLGEVSSHPHMAA
RGALTEVDGVACPAPAPRFSRTPTVISDLDRLLTTAEDISRQWESTNNR

Sequences:

>Translated_369_residues
MLKPEHGRGPLNGVRVVEFAGLGPAPFACMMLADMGADVVRIDRPGTKARDNDLVGRGRRTVLLDLKAEGDIERARSLLA
QADILVEGFRPGVMERLGLGPDTLLNINPRLVYGRMTGWGQDGPLSLAAGHDINYIALTGALAAIGDGDGLPVPPLNLVG
DYGGGSLYLLVGILAALHNSRETGHGQVIDAAICDGAMSLMTFAQSQRLNGLFKEQRSSNMLDGGAPYYTTYRTKDDKVV
CVGAIEPQFFALLCEKLGVKPELRDAQNDRKRWPILRAELEQIFKGQTQAEWTALLEGTDSCFSPVISLGEVSSHPHMAA
RGALTEVDGVACPAPAPRFSRTPTVISDLDRLLTTAEDISRQWESTNNR
>Mature_369_residues
MLKPEHGRGPLNGVRVVEFAGLGPAPFACMMLADMGADVVRIDRPGTKARDNDLVGRGRRTVLLDLKAEGDIERARSLLA
QADILVEGFRPGVMERLGLGPDTLLNINPRLVYGRMTGWGQDGPLSLAAGHDINYIALTGALAAIGDGDGLPVPPLNLVG
DYGGGSLYLLVGILAALHNSRETGHGQVIDAAICDGAMSLMTFAQSQRLNGLFKEQRSSNMLDGGAPYYTTYRTKDDKVV
CVGAIEPQFFALLCEKLGVKPELRDAQNDRKRWPILRAELEQIFKGQTQAEWTALLEGTDSCFSPVISLGEVSSHPHMAA
RGALTEVDGVACPAPAPRFSRTPTVISDLDRLLTTAEDISRQWESTNNR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=338, Percent_Identity=45.2662721893491, Blast_Score=301, Evalue=7e-82,
Organism=Homo sapiens, GI266456254, Length=338, Percent_Identity=45.2662721893491, Blast_Score=300, Evalue=1e-81,
Organism=Homo sapiens, GI266458393, Length=278, Percent_Identity=46.7625899280576, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI266458397, Length=245, Percent_Identity=49.7959183673469, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI300863128, Length=359, Percent_Identity=28.9693593314763, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI300863124, Length=335, Percent_Identity=29.2537313432836, Blast_Score=142, Evalue=7e-34,
Organism=Homo sapiens, GI266458395, Length=135, Percent_Identity=51.1111111111111, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI42822893, Length=135, Percent_Identity=51.1111111111111, Blast_Score=138, Evalue=6e-33,
Organism=Homo sapiens, GI300863126, Length=360, Percent_Identity=25.5555555555556, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI13376042, Length=325, Percent_Identity=27.3846153846154, Blast_Score=102, Evalue=5e-22,
Organism=Escherichia coli, GI87082093, Length=383, Percent_Identity=28.7206266318538, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788717, Length=378, Percent_Identity=25.6613756613757, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786222, Length=364, Percent_Identity=28.021978021978, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=333, Percent_Identity=37.5375375375375, Blast_Score=216, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=35.7771260997067, Blast_Score=214, Evalue=7e-56,
Organism=Drosophila melanogaster, GI24585488, Length=336, Percent_Identity=41.3690476190476, Blast_Score=265, Evalue=5e-71,
Organism=Drosophila melanogaster, GI24648431, Length=340, Percent_Identity=30.8823529411765, Blast_Score=135, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39757; Mature: 39757

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKPEHGRGPLNGVRVVEFAGLGPAPFACMMLADMGADVVRIDRPGTKARDNDLVGRGRR
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCE
TVLLDLKAEGDIERARSLLAQADILVEGFRPGVMERLGLGPDTLLNINPRLVYGRMTGWG
EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCEEEEEECCCCC
QDGPLSLAAGHDINYIALTGALAAIGDGDGLPVPPLNLVGDYGGGSLYLLVGILAALHNS
CCCCEEEECCCCCCEEEEECHHHEECCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHCC
RETGHGQVIDAAICDGAMSLMTFAQSQRLNGLFKEQRSSNMLDGGAPYYTTYRTKDDKVV
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEE
CVGAIEPQFFALLCEKLGVKPELRDAQNDRKRWPILRAELEQIFKGQTQAEWTALLEGTD
EEECCCHHHHHHHHHHHCCCCCHHCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCH
SCFSPVISLGEVSSHPHMAARGALTEVDGVACPAPAPRFSRTPTVISDLDRLLTTAEDIS
HHHHHHHHHHCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RQWESTNNR
HHHHCCCCC
>Mature Secondary Structure
MLKPEHGRGPLNGVRVVEFAGLGPAPFACMMLADMGADVVRIDRPGTKARDNDLVGRGRR
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCE
TVLLDLKAEGDIERARSLLAQADILVEGFRPGVMERLGLGPDTLLNINPRLVYGRMTGWG
EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCEEEEEECCCCC
QDGPLSLAAGHDINYIALTGALAAIGDGDGLPVPPLNLVGDYGGGSLYLLVGILAALHNS
CCCCEEEECCCCCCEEEEECHHHEECCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHCC
RETGHGQVIDAAICDGAMSLMTFAQSQRLNGLFKEQRSSNMLDGGAPYYTTYRTKDDKVV
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEE
CVGAIEPQFFALLCEKLGVKPELRDAQNDRKRWPILRAELEQIFKGQTQAEWTALLEGTD
EEECCCHHHHHHHHHHHCCCCCHHCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCH
SCFSPVISLGEVSSHPHMAARGALTEVDGVACPAPAPRFSRTPTVISDLDRLLTTAEDIS
HHHHHHHHHHCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RQWESTNNR
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]