Click here to switch to the map view.

The map label for this gene is ykgN [H]

Identifier: 94314415

GI number: 94314415

Start: 2241263

End: 2241535

Strand: Direct

Name: ykgN [H]

Synonym: Rmet_5496

Alternate gene names: 94314415

Gene position: 2241263-2241535 (Clockwise)

Preceding gene: 94314413

Following gene: 94314416

Centisome position: 86.87

GC content: 57.51

Gene sequence:

>273_bases
ATGAGCGGCAAGCGGTACACGGATGAGTTCAAGATTGAGGCAGTCAAGCAAGTCACTGAGCGCGGTCATTCGGTGGCGGA
TGTGGCGCAGAGGTTGGGCATCACGACCCATAGCCTGTACGCCTGGAAGAGGAAGTTCGAGAAACCGGACGTCGTGCAGC
GGGCCGAACTGGATCAGAACGCCGAGATTCGACGACTGAAGGCCGAGCTCAAGCGCGTGACAGAGGAGCGCGACATTCTA
AAAAAAGCCGCCGCGTACTTTGCAAAGGGATAG

Upstream 100 bases:

>100_bases
GGTTCCAACCGCCAGCGGTCCACCCTCGCTCGCAACGTGGACCGGCCAGCCTTTCGTAGACATCTTCGAGCCATAATTTG
TGGCAACCGAGGAGGTCAGT

Downstream 100 bases:

>100_bases
CGGCAAGGTACGCATTCATGCGCTCCCACATCAGTGAATATTGCCTGCGCACGATGTGTCGGGTACTGGGCGTTCATCGT
AGCGGTTACTACGTCTGGCA

Product: transposase DNA binding site ISRme11

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MSGKRYTDEFKIEAVKQVTERGHSVADVAQRLGITTHSLYAWKRKFEKPDVVQRAELDQNAEIRRLKAELKRVTEERDIL
KKAAAYFAKG

Sequences:

>Translated_90_residues
MSGKRYTDEFKIEAVKQVTERGHSVADVAQRLGITTHSLYAWKRKFEKPDVVQRAELDQNAEIRRLKAELKRVTEERDIL
KKAAAYFAKG
>Mature_89_residues
SGKRYTDEFKIEAVKQVTERGHSVADVAQRLGITTHSLYAWKRKFEKPDVVQRAELDQNAEIRRLKAELKRVTEERDILK
KAAAYFAKG

Specific function: Involved in the transposition of the insertion sequence is3 [C]

COG id: COG2963

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 8 family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002514 [H]

Pfam domain/function: PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 10420; Mature: 10289

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKRYTDEFKIEAVKQVTERGHSVADVAQRLGITTHSLYAWKRKFEKPDVVQRAELDQN
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHCCCC
AEIRRLKAELKRVTEERDILKKAAAYFAKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGKRYTDEFKIEAVKQVTERGHSVADVAQRLGITTHSLYAWKRKFEKPDVVQRAELDQN
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHCCCC
AEIRRLKAELKRVTEERDILKKAAAYFAKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8113168; 9278503 [H]