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The map label for this gene is phnF [C]

Identifier: 94314389

GI number: 94314389

Start: 2215441

End: 2216169

Strand: Reverse

Name: phnF [C]

Synonym: Rmet_5470

Alternate gene names: 94314389

Gene position: 2216169-2215441 (Counterclockwise)

Preceding gene: 94314390

Following gene: 94314388

Centisome position: 85.9

GC content: 58.44

Gene sequence:

>729_bases
GTGCGTTATACAGAACTGGCTAATACTCTCGTGAAGGGCATCACCGAGGGAAAATTCGCTGTTGGAGACCAACTGCCAAG
CGAGCTGGCCCTCGCAGATCAGTATGACGTCAGCCGCACTACGGTCCGTGCTGCCCTCGACATCGTCGAGGGCCTGGGTT
TAATCACGCGTCGACGCCGCGCGGGCACCATCGTTTGCTCAAATACCACCTCGAATACCTATACAAAGTCCGTCAACACG
ATTGAGGACCTGGTCAACTACGCCAGCCATACCGAACGAGAGGTTCTCGGCGTGGCGAATGTCGTGGCGGACGAGCGCCT
GGCCGCTGCCCTGGAATGCAAGCCTGGGGCCACCTGGTTGAGAATTCGAATGCTGCGCACCGAGATGGACAGCGAAGGTA
CGCCGCTATGCTGGAACGATGCATATGTTGACCCCGACATTGGCCAGCGAATCGCCCCCCTGGTTCCCAACGGCACCGGT
CTGCTCAGCCAAATTATCGAGCAGACCGTGGGTGTCACTGTCGCGGATATCAAGCAGACCATCGGCGCAACGACCATTAC
AGGCGAGATGGCGCGGCGATTGCTGGTTGAGCCTGGGGTCGCGGGGCTCGAGATCACTCGAACCTATCTTGATGACGCGA
AGAAGCCGTTCCTCATCACGGTAAATACCTACCCGGCGGACAAGTTCCGCTTCACGTTTTGGATGCATAGAGCCCCGACA
TCCGGGTGA

Upstream 100 bases:

>100_bases
GTGTACGATAGCGCCTGTCGAAGCCCGGGCGCCCGCCCGGCTTCCTTTATATTGAGCCGGGCGCGCACTTGGGCCCGCCT
GTTTGGGGACCGATTGAACA

Downstream 100 bases:

>100_bases
CAAATCGAGGGGGTGAAATCTTCCCGGTGACCAACGGCGCCGAGACGATGGGAGTCACGTCCATTCACCCTCAGCTACGA
GCTCTGCCAGGACGACGCCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; GntR Family Regulatory Protein; Histidine Utilization Repressor; Transcription Regulator; Phosphonate Metabolism Transcriptional Regulator PhnF; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH; GntR Family HTH Transcriptional Regulator; Gntr Family Transcriptional Regulator; UbiC Transcription Regulator-Associated Domain Protein; Transcriptional Regulator Gntr Family; GntR-Family Protein Transcriptional Regulator; GntR Family Regulatory Proteins; GntR Family Transcriptional Regulator YvoA; GntR Family Transcriptional Repressor Of Trehalose Operon; Transcriptional Regulator GntR UbiC Families; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MRYTELANTLVKGITEGKFAVGDQLPSELALADQYDVSRTTVRAALDIVEGLGLITRRRRAGTIVCSNTTSNTYTKSVNT
IEDLVNYASHTEREVLGVANVVADERLAAALECKPGATWLRIRMLRTEMDSEGTPLCWNDAYVDPDIGQRIAPLVPNGTG
LLSQIIEQTVGVTVADIKQTIGATTITGEMARRLLVEPGVAGLEITRTYLDDAKKPFLITVNTYPADKFRFTFWMHRAPT
SG

Sequences:

>Translated_242_residues
MRYTELANTLVKGITEGKFAVGDQLPSELALADQYDVSRTTVRAALDIVEGLGLITRRRRAGTIVCSNTTSNTYTKSVNT
IEDLVNYASHTEREVLGVANVVADERLAAALECKPGATWLRIRMLRTEMDSEGTPLCWNDAYVDPDIGQRIAPLVPNGTG
LLSQIIEQTVGVTVADIKQTIGATTITGEMARRLLVEPGVAGLEITRTYLDDAKKPFLITVNTYPADKFRFTFWMHRAPT
SG
>Mature_242_residues
MRYTELANTLVKGITEGKFAVGDQLPSELALADQYDVSRTTVRAALDIVEGLGLITRRRRAGTIVCSNTTSNTYTKSVNT
IEDLVNYASHTEREVLGVANVVADERLAAALECKPGATWLRIRMLRTEMDSEGTPLCWNDAYVDPDIGQRIAPLVPNGTG
LLSQIIEQTVGVTVADIKQTIGATTITGEMARRLLVEPGVAGLEITRTYLDDAKKPFLITVNTYPADKFRFTFWMHRAPT
SG

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790540, Length=235, Percent_Identity=25.9574468085106, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26507; Mature: 26507

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYTELANTLVKGITEGKFAVGDQLPSELALADQYDVSRTTVRAALDIVEGLGLITRRRR
CCHHHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
AGTIVCSNTTSNTYTKSVNTIEDLVNYASHTEREVLGVANVVADERLAAALECKPGATWL
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHH
RIRMLRTEMDSEGTPLCWNDAYVDPDIGQRIAPLVPNGTGLLSQIIEQTVGVTVADIKQT
HHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
IGATTITGEMARRLLVEPGVAGLEITRTYLDDAKKPFLITVNTYPADKFRFTFWMHRAPT
HCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCC
SG
CC
>Mature Secondary Structure
MRYTELANTLVKGITEGKFAVGDQLPSELALADQYDVSRTTVRAALDIVEGLGLITRRRR
CCHHHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
AGTIVCSNTTSNTYTKSVNTIEDLVNYASHTEREVLGVANVVADERLAAALECKPGATWL
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHH
RIRMLRTEMDSEGTPLCWNDAYVDPDIGQRIAPLVPNGTGLLSQIIEQTVGVTVADIKQT
HHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
IGATTITGEMARRLLVEPGVAGLEITRTYLDDAKKPFLITVNTYPADKFRFTFWMHRAPT
HCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCC
SG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA