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The map label for this gene is yaaU [H]

Identifier: 94314365

GI number: 94314365

Start: 2196627

End: 2198081

Strand: Reverse

Name: yaaU [H]

Synonym: Rmet_5446

Alternate gene names: 94314365

Gene position: 2198081-2196627 (Counterclockwise)

Preceding gene: 94314366

Following gene: 94314364

Centisome position: 85.19

GC content: 62.47

Gene sequence:

>1455_bases
GTGCAAACCTCTGCCATCAAGATACGTGGCATCGATGATGTCATCGCCTTCATAGATTCCTGTCCAGGCATTCGCGGCCG
CGCCGGCGTCATCTGGTGGCTGGCACTGGGCGGACTGTTCCTCGACGCATTCTCCAATTCCGCACTGAGCGCGGGCCTAG
GGCCCATGACGCGCGACCTGAAGCTGGAACCGGCGCAGGTGGCATTGCTGACGTCGTTCGCTTCGTGGGTGGCCATCGCC
TTCAATCCGCTGGGTGGCTGGATGGCTGACCGCTGGGGCCGTGTCAAACCGCTGATCCTGGCCAAGGTCTTTGCCGTCGT
GGGTGCCTTGCTGGTGGTATTCGCGCCCGATTTCAACGCGATTCTCGTGGGACGTTTCTTCGTCGGTGCCGCGTACGGTA
TCGACTTCGCCATTGCCATGGCGGTATTGGCGGAGTTCACGCCCGTGAAGCTCAAGAGCCGTCTCAATACCTGGCAGGGC
ATGTGGTACACGGCTGTTTGCCTGAACCTGCTGCTCGCGTTGTTGTTTTACTCGTGGCAAGTCGGTGACACGATCTGGCG
TTACTCGGTGGCGGCCACGGCTGTGTTTGGCGTCGGCATCCTGATCTTGCAAGTACTGTTCCTGGTGGAAAGCCCGACAT
GGCTGGCGCGCAAGGAGCGCCTCGAAGCCGCCGCGCAGGCCATGACACGCATCTACGGTCGTCCGTTCGAAGCTGCGCCA
CTGGCCGAGCGCGTTCCGGTGACCAACATGGCACGCCGCGGTCTCGCCAACGTGCTGCTGATCTTCCGTGGCATCTATTT
GCCCCGCACGATTCTGGCGGCCACCGTGCAGATCGGTCAGTCGATCCAGTACTTCGGCATTGGCTGGTATCTGCCGCTGA
TCAGCGCGGCGCTGTTCGGCAAGGACTTTGTCTATGCCACGATTGGCGCGCTGGTGTTCAATGTGTGTGGCATCTTCGGT
GGCTTCCTGTCACCGGTGATCGGCCGCAAGCTCGGCCTGCGCCGTGCTTCCGCGTACGGCTTCGCGGCGGTGTTCGTGAT
GCTGCTGATTCTTGGCCTGTTCAACGGCAAGATGCCCACATGGGTGGCCGTGGTCGTGCCGTCGCTGTTCATCCTGTTCC
ACTCGGGCGGCCCTGGCGCCAATGGCAAGAGCTTGTCGTCGCTGTCATTCCGCAGCGAACTGCGCGCGGGCGCCAACGGC
GTTATCGGCGCGCTGGGTGCCATCGGAGCCGCGCTGGGCCTGCTGGTATTCCCGCTGTTTCGCGCGCGCTACGGGCTCGA
AACCACTTTCCTGATTCTCTCCGTCGTGCCGCTGGTGGCCAGCATTATCTGCTTCCTCATTCGCTGGGACCCCACGCGCA
CGGCCATTCATCCCGATAACGAAGCCGATGCGCCGCAGTTCCGCAGCGATGCACGCGACGGCGCCGGCTTCATGCATCCC
GCTACAGAGAAGTAA

Upstream 100 bases:

>100_bases
ATTCGCTGGGCAGATTCAGATAAGAGACCATCTGTAAGATGGTCTCTTAGCGCGTGCAGTTTGCTGCGGCCTCTTACAGA
ACAACGACAAGGAGACCGCC

Downstream 100 bases:

>100_bases
CACCATGAAAAACAGGAACGTCATCCTGGCGATCGACGAAGGCACGTCTGGTACGCGTGCCGCGGTGGTTGCCAGCGACG
GCCACGTCTCGTGTCAGCAG

Product: putative transporter; major facilitator superfamily (MFS)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MQTSAIKIRGIDDVIAFIDSCPGIRGRAGVIWWLALGGLFLDAFSNSALSAGLGPMTRDLKLEPAQVALLTSFASWVAIA
FNPLGGWMADRWGRVKPLILAKVFAVVGALLVVFAPDFNAILVGRFFVGAAYGIDFAIAMAVLAEFTPVKLKSRLNTWQG
MWYTAVCLNLLLALLFYSWQVGDTIWRYSVAATAVFGVGILILQVLFLVESPTWLARKERLEAAAQAMTRIYGRPFEAAP
LAERVPVTNMARRGLANVLLIFRGIYLPRTILAATVQIGQSIQYFGIGWYLPLISAALFGKDFVYATIGALVFNVCGIFG
GFLSPVIGRKLGLRRASAYGFAAVFVMLLILGLFNGKMPTWVAVVVPSLFILFHSGGPGANGKSLSSLSFRSELRAGANG
VIGALGAIGAALGLLVFPLFRARYGLETTFLILSVVPLVASIICFLIRWDPTRTAIHPDNEADAPQFRSDARDGAGFMHP
ATEK

Sequences:

>Translated_484_residues
MQTSAIKIRGIDDVIAFIDSCPGIRGRAGVIWWLALGGLFLDAFSNSALSAGLGPMTRDLKLEPAQVALLTSFASWVAIA
FNPLGGWMADRWGRVKPLILAKVFAVVGALLVVFAPDFNAILVGRFFVGAAYGIDFAIAMAVLAEFTPVKLKSRLNTWQG
MWYTAVCLNLLLALLFYSWQVGDTIWRYSVAATAVFGVGILILQVLFLVESPTWLARKERLEAAAQAMTRIYGRPFEAAP
LAERVPVTNMARRGLANVLLIFRGIYLPRTILAATVQIGQSIQYFGIGWYLPLISAALFGKDFVYATIGALVFNVCGIFG
GFLSPVIGRKLGLRRASAYGFAAVFVMLLILGLFNGKMPTWVAVVVPSLFILFHSGGPGANGKSLSSLSFRSELRAGANG
VIGALGAIGAALGLLVFPLFRARYGLETTFLILSVVPLVASIICFLIRWDPTRTAIHPDNEADAPQFRSDARDGAGFMHP
ATEK
>Mature_484_residues
MQTSAIKIRGIDDVIAFIDSCPGIRGRAGVIWWLALGGLFLDAFSNSALSAGLGPMTRDLKLEPAQVALLTSFASWVAIA
FNPLGGWMADRWGRVKPLILAKVFAVVGALLVVFAPDFNAILVGRFFVGAAYGIDFAIAMAVLAEFTPVKLKSRLNTWQG
MWYTAVCLNLLLALLFYSWQVGDTIWRYSVAATAVFGVGILILQVLFLVESPTWLARKERLEAAAQAMTRIYGRPFEAAP
LAERVPVTNMARRGLANVLLIFRGIYLPRTILAATVQIGQSIQYFGIGWYLPLISAALFGKDFVYATIGALVFNVCGIFG
GFLSPVIGRKLGLRRASAYGFAAVFVMLLILGLFNGKMPTWVAVVVPSLFILFHSGGPGANGKSLSSLSFRSELRAGANG
VIGALGAIGAALGLLVFPLFRARYGLETTFLILSVVPLVASIICFLIRWDPTRTAIHPDNEADAPQFRSDARDGAGFMHP
ATEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Escherichia coli, GI1786229, Length=401, Percent_Identity=26.9326683291771, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788068, Length=396, Percent_Identity=21.969696969697, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 52232; Mature: 52232

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCC
>Mature Secondary Structure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CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]