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The map label for this gene is glpD2 [H]

Identifier: 94314363

GI number: 94314363

Start: 2193400

End: 2195079

Strand: Reverse

Name: glpD2 [H]

Synonym: Rmet_5444

Alternate gene names: 94314363

Gene position: 2195079-2193400 (Counterclockwise)

Preceding gene: 94314364

Following gene: 94314362

Centisome position: 85.08

GC content: 64.35

Gene sequence:

>1680_bases
ATGATGGGTTTTCCATCCCGCAGCGCAAACCGCGAGCGCGCCGCCATGACCCGCGTCGAGCCGCTTCGGCTGGTGCGCAG
TGAACAGCTCGACCGGCTGGAATCGGAAGCATTCGACATCCTCATCGTCGGTGGCGGTGTCACCGGCGCTTACGCGGCGC
TGGACGCCAGCCTGCGTGGTTATCGCGTGGCCCTGGTCGAGAAGAACGATTTCGCATCGGGGACGTCATCCAAGTCATCG
AAGATGGTGCACGGTGGCCTGCGCTATATCGAGCAAGGCAACCTCGGTCTTGTCCGCCATTCGCTGCTCGAGCGTCAGCG
GCTGCGCCGCAATGCACGGCACCTGGTCCAGCGCCTGCCGTTCCTGTTTCCGGTGATGGAACGTGACGGTGTGTTCGACA
AGCGCCTGGCCAAGGCCTTCGAAGGTCTGTTGTGGACCTACGATCTGGCCGGCGGCTGGCGTGAAGGCATCCTGCACCAG
AAGCTGACGAAGGCGGAAGTGCTGTCGCATTGTCCGACGTTCAACGATGAACATCTGAAGGGCGGCTTCCTGTACTTCGA
TGCGCGCGTCGATGATGCGCGGCTGACGCTGAACATCGCACGCACCGCCGCGTTTCACGGAGCGGTGGTGACCAACCACG
CACTGGTCACGGAAATCACGCGTCATGCCAGCGGCAAGGTGGATGGCGCGATCATTCAAGCCGACGGCCGCGAGATCCGC
GCGCGTGCGGACGTGGTCATCATGGCCACCGGTGTGTGGCTGCGCGACTGGACCGGTGGCAGAAAGGGCGAGCAGAAGAC
CCTGAACATCCGGCCCGCCAAGGGTGTTCACGTCGCCATTCCGTGGCTCAAGATCCGCAACGACTGCACGGTGACGATTC
CCGTGCCGGGCCGCAGTCGTCGCGCCACGATCACGCGCTGGGGCAACGTCTCGTACCTGGGCACCACGGACGAAGATTAC
GAAGGCGATCTCGACAATGTCATGTGCACGCGGCAGGAGCTTGATTTCCTGCTGGAGGGCGCGCGTTCGGCGTTGAAGAC
CGATATCGCGCCAGAAGACGTGGTTGGCAGCATCGCTGGCTGTCGTCCACTGGTGGCACCGCCCGGCGGCAAGACGCTGG
AAGTCCGGCGCGACCATCACATCCATATCGCTGGTGATGGGCTGGTGACGATCGTCGGCGGCAAGCTCACCACTTCGCGC
CATATGGCGGAGCAGACCGTCGACGCGGCGCAGAAGGTTCTTGGCAAGCGTGCGAAATGCCGGACGAAGTCGGCCTTTCT
GCTTGGCGCTGCCGGATACGATCCACAAGCCATCGTTGCGTCGGGAGGCATGTCCGCGCACCTGGGCGAGCGCTATGGCA
CCGAGGCGCGTTTCGTCAGTGACATCCTCCAGGCCGACCCGGCGCTCGCGCGGCCCATTGTCGAAGGCTTGCCGCATTCC
GAAGCCGAGATCGTCTATGCCGTGCGTCACGAAATGGCCGGCACCGTCGACGACGTGCTGTCGCGCCGCATTCGCGCGCG
GCTGATGGCGCGTGACGCATCGGCGCAGGCCGCGCCACGCGTGGCCCAGATCCTCCAGGCCGAGCTCGGACTTTCCGGGC
AGGCCGTCGCGCAGCAGGTCAGTGACTACCTGGCCGCTGTCGCCCTCGAAAAATCCGTCCTAATGGGAGAAGCAACATGA

Upstream 100 bases:

>100_bases
CGGGAGGAACGGCGTGCGCTCTGGCACGCGCGTGTCGCTTCCGAGCTTTCCCACGTGCAGGCATTTGCCGCGCATTGACC
GATCAGGAGAAGCAAGCAAC

Downstream 100 bases:

>100_bases
TCAGCAAGGAAGCCATCAAGCGCGGCTACAACCGTGGCAACTACGTCGTCGGCAAGCACACGCCGCCTCACTTTGCCGGG
AGTATCACGGCGACGCCAGA

Product: putative glycerol-3-phosphate oxidase (FAD-dependent)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MMGFPSRSANRERAAMTRVEPLRLVRSEQLDRLESEAFDILIVGGGVTGAYAALDASLRGYRVALVEKNDFASGTSSKSS
KMVHGGLRYIEQGNLGLVRHSLLERQRLRRNARHLVQRLPFLFPVMERDGVFDKRLAKAFEGLLWTYDLAGGWREGILHQ
KLTKAEVLSHCPTFNDEHLKGGFLYFDARVDDARLTLNIARTAAFHGAVVTNHALVTEITRHASGKVDGAIIQADGREIR
ARADVVIMATGVWLRDWTGGRKGEQKTLNIRPAKGVHVAIPWLKIRNDCTVTIPVPGRSRRATITRWGNVSYLGTTDEDY
EGDLDNVMCTRQELDFLLEGARSALKTDIAPEDVVGSIAGCRPLVAPPGGKTLEVRRDHHIHIAGDGLVTIVGGKLTTSR
HMAEQTVDAAQKVLGKRAKCRTKSAFLLGAAGYDPQAIVASGGMSAHLGERYGTEARFVSDILQADPALARPIVEGLPHS
EAEIVYAVRHEMAGTVDDVLSRRIRARLMARDASAQAAPRVAQILQAELGLSGQAVAQQVSDYLAAVALEKSVLMGEAT

Sequences:

>Translated_559_residues
MMGFPSRSANRERAAMTRVEPLRLVRSEQLDRLESEAFDILIVGGGVTGAYAALDASLRGYRVALVEKNDFASGTSSKSS
KMVHGGLRYIEQGNLGLVRHSLLERQRLRRNARHLVQRLPFLFPVMERDGVFDKRLAKAFEGLLWTYDLAGGWREGILHQ
KLTKAEVLSHCPTFNDEHLKGGFLYFDARVDDARLTLNIARTAAFHGAVVTNHALVTEITRHASGKVDGAIIQADGREIR
ARADVVIMATGVWLRDWTGGRKGEQKTLNIRPAKGVHVAIPWLKIRNDCTVTIPVPGRSRRATITRWGNVSYLGTTDEDY
EGDLDNVMCTRQELDFLLEGARSALKTDIAPEDVVGSIAGCRPLVAPPGGKTLEVRRDHHIHIAGDGLVTIVGGKLTTSR
HMAEQTVDAAQKVLGKRAKCRTKSAFLLGAAGYDPQAIVASGGMSAHLGERYGTEARFVSDILQADPALARPIVEGLPHS
EAEIVYAVRHEMAGTVDDVLSRRIRARLMARDASAQAAPRVAQILQAELGLSGQAVAQQVSDYLAAVALEKSVLMGEAT
>Mature_559_residues
MMGFPSRSANRERAAMTRVEPLRLVRSEQLDRLESEAFDILIVGGGVTGAYAALDASLRGYRVALVEKNDFASGTSSKSS
KMVHGGLRYIEQGNLGLVRHSLLERQRLRRNARHLVQRLPFLFPVMERDGVFDKRLAKAFEGLLWTYDLAGGWREGILHQ
KLTKAEVLSHCPTFNDEHLKGGFLYFDARVDDARLTLNIARTAAFHGAVVTNHALVTEITRHASGKVDGAIIQADGREIR
ARADVVIMATGVWLRDWTGGRKGEQKTLNIRPAKGVHVAIPWLKIRNDCTVTIPVPGRSRRATITRWGNVSYLGTTDEDY
EGDLDNVMCTRQELDFLLEGARSALKTDIAPEDVVGSIAGCRPLVAPPGGKTLEVRRDHHIHIAGDGLVTIVGGKLTTSR
HMAEQTVDAAQKVLGKRAKCRTKSAFLLGAAGYDPQAIVASGGMSAHLGERYGTEARFVSDILQADPALARPIVEGLPHS
EAEIVYAVRHEMAGTVDDVLSRRIRARLMARDASAQAAPRVAQILQAELGLSGQAVAQQVSDYLAAVALEKSVLMGEAT

Specific function: Conversion Of Glycerol 3-Phosphate To Dihydroxyacetone. Uses Molecular Oxygen Or Nitrate As Electron Acceptor. [C]

COG id: COG0578

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI285002233, Length=547, Percent_Identity=32.5411334552102, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI285002231, Length=547, Percent_Identity=32.5411334552102, Blast_Score=234, Evalue=1e-61,
Organism=Escherichia coli, GI2367226, Length=497, Percent_Identity=26.7605633802817, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1788574, Length=394, Percent_Identity=31.7258883248731, Blast_Score=107, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17509253, Length=522, Percent_Identity=33.7164750957854, Blast_Score=230, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI115534726, Length=536, Percent_Identity=32.089552238806, Blast_Score=211, Evalue=7e-55,
Organism=Saccharomyces cerevisiae, GI6322036, Length=590, Percent_Identity=29.6610169491525, Blast_Score=193, Evalue=6e-50,
Organism=Drosophila melanogaster, GI161077125, Length=556, Percent_Identity=33.273381294964, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24653942, Length=556, Percent_Identity=33.273381294964, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24653944, Length=556, Percent_Identity=33.273381294964, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI20130025, Length=556, Percent_Identity=33.273381294964, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24586295, Length=570, Percent_Identity=30.8771929824561, Blast_Score=190, Evalue=2e-48,
Organism=Drosophila melanogaster, GI19921278, Length=559, Percent_Identity=26.2969588550984, Blast_Score=136, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR000447 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.5.3 [H]

Molecular weight: Translated: 60947; Mature: 60947

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGFPSRSANRERAAMTRVEPLRLVRSEQLDRLESEAFDILIVGGGVTGAYAALDASLRG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCC
YRVALVEKNDFASGTSSKSSKMVHGGLRYIEQGNLGLVRHSLLERQRLRRNARHLVQRLP
EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
FLFPVMERDGVFDKRLAKAFEGLLWTYDLAGGWREGILHQKLTKAEVLSHCPTFNDEHLK
HHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GGFLYFDARVDDARLTLNIARTAAFHGAVVTNHALVTEITRHASGKVDGAIIQADGREIR
CCEEEEEEEECCCEEEEEEHHHHHHCCHHHHCCHHHHHHHHHCCCCCCCEEEECCCCEEE
ARADVVIMATGVWLRDWTGGRKGEQKTLNIRPAKGVHVAIPWLKIRNDCTVTIPVPGRSR
CCCCEEEEEECEEEECCCCCCCCCCCEEEECCCCCCEEEECEEEECCCEEEEEECCCCCC
RATITRWGNVSYLGTTDEDYEGDLDNVMCTRQELDFLLEGARSALKTDIAPEDVVGSIAG
CEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
CRPLVAPPGGKTLEVRRDHHIHIAGDGLVTIVGGKLTTSRHMAEQTVDAAQKVLGKRAKC
CCCCCCCCCCCEEEEECCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHC
RTKSAFLLGAAGYDPQAIVASGGMSAHLGERYGTEARFVSDILQADPALARPIVEGLPHS
CCCCEEEEEECCCCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCC
EAEIVYAVRHEMAGTVDDVLSRRIRARLMARDASAQAAPRVAQILQAELGLSGQAVAQQV
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
SDYLAAVALEKSVLMGEAT
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMGFPSRSANRERAAMTRVEPLRLVRSEQLDRLESEAFDILIVGGGVTGAYAALDASLRG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCC
YRVALVEKNDFASGTSSKSSKMVHGGLRYIEQGNLGLVRHSLLERQRLRRNARHLVQRLP
EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
FLFPVMERDGVFDKRLAKAFEGLLWTYDLAGGWREGILHQKLTKAEVLSHCPTFNDEHLK
HHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GGFLYFDARVDDARLTLNIARTAAFHGAVVTNHALVTEITRHASGKVDGAIIQADGREIR
CCEEEEEEEECCCEEEEEEHHHHHHCCHHHHCCHHHHHHHHHCCCCCCCEEEECCCCEEE
ARADVVIMATGVWLRDWTGGRKGEQKTLNIRPAKGVHVAIPWLKIRNDCTVTIPVPGRSR
CCCCEEEEEECEEEECCCCCCCCCCCEEEECCCCCCEEEECEEEECCCEEEEEECCCCCC
RATITRWGNVSYLGTTDEDYEGDLDNVMCTRQELDFLLEGARSALKTDIAPEDVVGSIAG
CEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
CRPLVAPPGGKTLEVRRDHHIHIAGDGLVTIVGGKLTTSRHMAEQTVDAAQKVLGKRAKC
CCCCCCCCCCCEEEEECCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHC
RTKSAFLLGAAGYDPQAIVASGGMSAHLGERYGTEARFVSDILQADPALARPIVEGLPHS
CCCCEEEEEECCCCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCC
EAEIVYAVRHEMAGTVDDVLSRRIRARLMARDASAQAAPRVAQILQAELGLSGQAVAQQV
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
SDYLAAVALEKSVLMGEAT
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]