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The map label for this gene is abgR [H]

Identifier: 94314336

GI number: 94314336

Start: 2162831

End: 2163739

Strand: Direct

Name: abgR [H]

Synonym: Rmet_5417

Alternate gene names: 94314336

Gene position: 2162831-2163739 (Clockwise)

Preceding gene: 94314335

Following gene: 94314337

Centisome position: 83.83

GC content: 65.79

Gene sequence:

>909_bases
ATGAAGCTCCATCAATTGCGCGCGTTGGCCGCCGTCTCCGAGACGGGCAGCATGCAGGAGGCATCCCGCCTGCTCCACGT
CACCCAGCCAGCACTGAGCAAGGCCATCAAGGAACTGGAAGCCAGCGTGGGTGCCGCGCTGTTCGTGCGCACGAACAAGG
GTGTGCAACTCACACCATACGGGCAACGACTGGTCGGCCACGCCCGCCTGATCAGCGAGAACGTCAGGCGCGCGCGCCAG
GATCTCGAGGACATGAAAGGGACCGTGGTCAGCGAGATCACCGTTGCCGTCACGCCGGTCACCGCCCTGCTGCGCCCGGC
GGGCGCCTGCATCACGGCGTTCCGGCGCGATTTCCCGAGCGCACAGTTGCGCGTGCAGGAAATGCGGCCCGCGCAAATGC
TCGAGCACCTGCGCGAAGGCACCATCGACTTCGCGCTGACCTCCCAGTCCCTGGCCACCGCGCATGGCCTCGACTGCGCC
CAGGCTTGCCACGTGCCGACGCTGATTGCTGGCCGCAAGGATCATCCGTTGCGCAAGACGCGCTCGCTGGGCGCGTTGCT
GGAGGCGGAGTGGCTCGTACTCGATCCGCTCTCCGATACCGGCACGCCGTTTCATCAGCTCTTCGTCATCAACGGCATGA
CGCTGCCGTCGCGCGTTGTCGAATGCACGTCGATGACCCTGGCCCTGGAGATGTGCCGGCAGAGCGACCTGCTGGTGCTG
CTCTCCGAGGAATCCCGCCGCAGTCGCTATCTCGTCGAAACCATGGACTTCATCGACGTCGACGAGACCATGCCGGATCG
CACCATCGCGCTGGTATCGCGTGACCGCCACACCCTCACCTGGGCGGCGGCACGGCTGCACGATGCCTTGCTGGACGCAT
TGCGCCAGGAGTTTCCCACGGCGGATTGA

Upstream 100 bases:

>100_bases
GTGGCATTCTGGGCAGTCAGAAAACACGCAGGAGGTCTCGTCGCGCCTAGAATGGCGGCTTTCCGCAAGCGGATTGCGGG
TCGTTCCGGGGAGACCCCTC

Downstream 100 bases:

>100_bases
CGCCACCCCGTGATTACCAACGCTCATACCCATGAAAAAAAGCTGCGTGCGCCATGGGTGCCAGGCACCTAAGATCGTCC
GGTCGAACAGAAACCCATAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKLHQLRALAAVSETGSMQEASRLLHVTQPALSKAIKELEASVGAALFVRTNKGVQLTPYGQRLVGHARLISENVRRARQ
DLEDMKGTVVSEITVAVTPVTALLRPAGACITAFRRDFPSAQLRVQEMRPAQMLEHLREGTIDFALTSQSLATAHGLDCA
QACHVPTLIAGRKDHPLRKTRSLGALLEAEWLVLDPLSDTGTPFHQLFVINGMTLPSRVVECTSMTLALEMCRQSDLLVL
LSEESRRSRYLVETMDFIDVDETMPDRTIALVSRDRHTLTWAAARLHDALLDALRQEFPTAD

Sequences:

>Translated_302_residues
MKLHQLRALAAVSETGSMQEASRLLHVTQPALSKAIKELEASVGAALFVRTNKGVQLTPYGQRLVGHARLISENVRRARQ
DLEDMKGTVVSEITVAVTPVTALLRPAGACITAFRRDFPSAQLRVQEMRPAQMLEHLREGTIDFALTSQSLATAHGLDCA
QACHVPTLIAGRKDHPLRKTRSLGALLEAEWLVLDPLSDTGTPFHQLFVINGMTLPSRVVECTSMTLALEMCRQSDLLVL
LSEESRRSRYLVETMDFIDVDETMPDRTIALVSRDRHTLTWAAARLHDALLDALRQEFPTAD
>Mature_302_residues
MKLHQLRALAAVSETGSMQEASRLLHVTQPALSKAIKELEASVGAALFVRTNKGVQLTPYGQRLVGHARLISENVRRARQ
DLEDMKGTVVSEITVAVTPVTALLRPAGACITAFRRDFPSAQLRVQEMRPAQMLEHLREGTIDFALTSQSLATAHGLDCA
QACHVPTLIAGRKDHPLRKTRSLGALLEAEWLVLDPLSDTGTPFHQLFVINGMTLPSRVVECTSMTLALEMCRQSDLLVL
LSEESRRSRYLVETMDFIDVDETMPDRTIALVSRDRHTLTWAAARLHDALLDALRQEFPTAD

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=278, Percent_Identity=30.2158273381295, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787879, Length=203, Percent_Identity=30.5418719211823, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789506, Length=294, Percent_Identity=25.8503401360544, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI145693105, Length=180, Percent_Identity=28.8888888888889, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081904, Length=308, Percent_Identity=25.974025974026, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=27.681660899654, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=185, Percent_Identity=25.4054054054054, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788887, Length=189, Percent_Identity=26.984126984127, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33422; Mature: 33422

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLHQLRALAAVSETGSMQEASRLLHVTQPALSKAIKELEASVGAALFVRTNKGVQLTPY
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEECCC
GQRLVGHARLISENVRRARQDLEDMKGTVVSEITVAVTPVTALLRPAGACITAFRRDFPS
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH
AQLRVQEMRPAQMLEHLREGTIDFALTSQSLATAHGLDCAQACHVPTLIAGRKDHPLRKT
HHHHHHHCCHHHHHHHHHCCCEEEEECCHHHHHHHCCCHHHHCCCCHHCCCCCCCCHHHH
RSLGALLEAEWLVLDPLSDTGTPFHQLFVINGMTLPSRVVECTSMTLALEMCRQSDLLVL
HHHHHHHHCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
LSEESRRSRYLVETMDFIDVDETMPDRTIALVSRDRHTLTWAAARLHDALLDALRQEFPT
ECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC
AD
CC
>Mature Secondary Structure
MKLHQLRALAAVSETGSMQEASRLLHVTQPALSKAIKELEASVGAALFVRTNKGVQLTPY
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEECCC
GQRLVGHARLISENVRRARQDLEDMKGTVVSEITVAVTPVTALLRPAGACITAFRRDFPS
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH
AQLRVQEMRPAQMLEHLREGTIDFALTSQSLATAHGLDCAQACHVPTLIAGRKDHPLRKT
HHHHHHHCCHHHHHHHHHCCCEEEEECCHHHHHHHCCCHHHHCCCCHHCCCCCCCCHHHH
RSLGALLEAEWLVLDPLSDTGTPFHQLFVINGMTLPSRVVECTSMTLALEMCRQSDLLVL
HHHHHHHHCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
LSEESRRSRYLVETMDFIDVDETMPDRTIALVSRDRHTLTWAAARLHDALLDALRQEFPT
ECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC
AD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]