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The map label for this gene is ydhP [H]

Identifier: 94314285

GI number: 94314285

Start: 2087898

End: 2089064

Strand: Direct

Name: ydhP [H]

Synonym: Rmet_5366

Alternate gene names: 94314285

Gene position: 2087898-2089064 (Clockwise)

Preceding gene: 291481567

Following gene: 94314288

Centisome position: 80.92

GC content: 67.69

Gene sequence:

>1167_bases
ATGAAATCGAACACCGCACTGCTCGCCCTCGCCATCGGCGCATTCGGCATCGGCACCACCGAGTTCACGCCGATGGGCTT
GCTCCCGGTCATTGCCGAGGGCGTCAACGTCAGCATTCCCACCGCGGGGATGCTGATCACCGCCTACGCCATTGGCGTGA
TGGTCGGCGCGCCCGTGATGACGCTGCTGTTCAGCCGATTCGGCAAGCGCACCGCGCTGATGGCGCTGATGGCGATCTTC
ACCATCGGCAACCTGCTGTCGGCATTGGCACCGGGATACGGCACGCTGCTCGCGTCCCGCCTGGTGACCAGCCTCAACCA
CGGCGCATTCTTCGGCCTGGGCTCGGTCGTGGCCGCAAGCGTGGTGCCGAAGGAGAAGCAGGCCAGCGCCGTGGCAACGA
TGTTCATGGGCCTGACCATCGCCAATATCGGCGGTGTGCCGGCCGCCACGTGGATCGGTCAGCAGGTTGGCTGGCGCCTG
GCGTTCGCGGGCACGGCCGCGCTCGGACTGGTTGCGATCGCCGCGCTCTGGCTCGCGCTACCCAAGGGCGAGCGCGGTAC
GCGGCCGAACGTGCGACGCGAACTGACCGTGCTCACCCACCCGACCGTGCTGCTGGCCATGGCGACGACAGTGCTCGGCG
CGGGCGCGATGTTCACGCTCTACACCTATGTGGCGCCGATGCTCGCCAAGCTGACTGGCGCATCCGACAACTTCGTTGCA
TTGGGTCTGGTACTGATCGGGGTGGGCTTCACGATCGGCAATCACCTTGGCGGCAAGCTTGCCGACCGCTCGCTGGACGG
CGCGACGACGACCTTCCTGACCGCACTCGCCGTCATCATGCTGGTGCTGCCGTTCGCGCTGCAAAGCCATGTCGGCGCGG
CAGTTGGTCTGCTGGTCTGGGGCGCGGCAGCCTTCGCCGTGGTGCCGCCGCTGCAGATGCGCGTGATGGAAGCCGCTGCG
GAAGCGCCCGGACTCGCGTCGTCGATCAACGTCGGCGCCTTCAATCTCGGCAACGCGGTGGGCGCCGCGCTCGGCGGCGG
TGTCATCAGCCTCGGACTCGGCTACGCCGTCGTGCCGGTAGCAGGTGGCCTGCTGGCGGCATCGGGCGTGCTACTTGTGT
GGCTCGGCCGTGCCAGCAAGCGCGCCGGGCAGCCTGTGAAGGCATAA

Upstream 100 bases:

>100_bases
CGTTTGTCGCCAACCAAGATCTGGTAGCCCACCTGGAGCACAACTGGCCGCGCAGCGTTGCACCGCACGCCTTCCACGAC
GTTCTGAGGGGCCTGCCGCG

Downstream 100 bases:

>100_bases
CGCGCCGCTGGCATCAGCATGGACAGCGTTACAGGCTACAGTTGTCCGGGCTATGCGCCTGCCGTGTCCGTGGCAGGCGC
GAGCCGCAGCACGCAGTCGA

Product: major facilitator superfamily transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKSNTALLALAIGAFGIGTTEFTPMGLLPVIAEGVNVSIPTAGMLITAYAIGVMVGAPVMTLLFSRFGKRTALMALMAIF
TIGNLLSALAPGYGTLLASRLVTSLNHGAFFGLGSVVAASVVPKEKQASAVATMFMGLTIANIGGVPAATWIGQQVGWRL
AFAGTAALGLVAIAALWLALPKGERGTRPNVRRELTVLTHPTVLLAMATTVLGAGAMFTLYTYVAPMLAKLTGASDNFVA
LGLVLIGVGFTIGNHLGGKLADRSLDGATTTFLTALAVIMLVLPFALQSHVGAAVGLLVWGAAAFAVVPPLQMRVMEAAA
EAPGLASSINVGAFNLGNAVGAALGGGVISLGLGYAVVPVAGGLLAASGVLLVWLGRASKRAGQPVKA

Sequences:

>Translated_388_residues
MKSNTALLALAIGAFGIGTTEFTPMGLLPVIAEGVNVSIPTAGMLITAYAIGVMVGAPVMTLLFSRFGKRTALMALMAIF
TIGNLLSALAPGYGTLLASRLVTSLNHGAFFGLGSVVAASVVPKEKQASAVATMFMGLTIANIGGVPAATWIGQQVGWRL
AFAGTAALGLVAIAALWLALPKGERGTRPNVRRELTVLTHPTVLLAMATTVLGAGAMFTLYTYVAPMLAKLTGASDNFVA
LGLVLIGVGFTIGNHLGGKLADRSLDGATTTFLTALAVIMLVLPFALQSHVGAAVGLLVWGAAAFAVVPPLQMRVMEAAA
EAPGLASSINVGAFNLGNAVGAALGGGVISLGLGYAVVPVAGGLLAASGVLLVWLGRASKRAGQPVKA
>Mature_388_residues
MKSNTALLALAIGAFGIGTTEFTPMGLLPVIAEGVNVSIPTAGMLITAYAIGVMVGAPVMTLLFSRFGKRTALMALMAIF
TIGNLLSALAPGYGTLLASRLVTSLNHGAFFGLGSVVAASVVPKEKQASAVATMFMGLTIANIGGVPAATWIGQQVGWRL
AFAGTAALGLVAIAALWLALPKGERGTRPNVRRELTVLTHPTVLLAMATTVLGAGAMFTLYTYVAPMLAKLTGASDNFVA
LGLVLIGVGFTIGNHLGGKLADRSLDGATTTFLTALAVIMLVLPFALQSHVGAAVGLLVWGAAAFAVVPPLQMRVMEAAA
EAPGLASSINVGAFNLGNAVGAALGGGVISLGLGYAVVPVAGGLLAASGVLLVWLGRASKRAGQPVKA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=375, Percent_Identity=68.2666666666667, Blast_Score=477, Evalue=1e-136,
Organism=Escherichia coli, GI1786595, Length=391, Percent_Identity=34.0153452685422, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI1787808, Length=346, Percent_Identity=28.6127167630058, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI145693198, Length=332, Percent_Identity=26.5060240963855, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 39012; Mature: 39012

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNTALLALAIGAFGIGTTEFTPMGLLPVIAEGVNVSIPTAGMLITAYAIGVMVGAPVM
CCCCCEEHHEEHHHHCCCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHH
TLLFSRFGKRTALMALMAIFTIGNLLSALAPGYGTLLASRLVTSLNHGAFFGLGSVVAAS
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VVPKEKQASAVATMFMGLTIANIGGVPAATWIGQQVGWRLAFAGTAALGLVAIAALWLAL
HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHC
PKGERGTRPNVRRELTVLTHPTVLLAMATTVLGAGAMFTLYTYVAPMLAKLTGASDNFVA
CCCCCCCCCCHHHHEEEHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHH
LGLVLIGVGFTIGNHLGGKLADRSLDGATTTFLTALAVIMLVLPFALQSHVGAAVGLLVW
HHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAAAFAVVPPLQMRVMEAAAEAPGLASSINVGAFNLGNAVGAALGGGVISLGLGYAVVPV
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHCCHHHHHHCCHHHHHH
AGGLLAASGVLLVWLGRASKRAGQPVKA
HHHHHHHCCHHHEEECCHHHHCCCCCCC
>Mature Secondary Structure
MKSNTALLALAIGAFGIGTTEFTPMGLLPVIAEGVNVSIPTAGMLITAYAIGVMVGAPVM
CCCCCEEHHEEHHHHCCCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHH
TLLFSRFGKRTALMALMAIFTIGNLLSALAPGYGTLLASRLVTSLNHGAFFGLGSVVAAS
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VVPKEKQASAVATMFMGLTIANIGGVPAATWIGQQVGWRLAFAGTAALGLVAIAALWLAL
HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHC
PKGERGTRPNVRRELTVLTHPTVLLAMATTVLGAGAMFTLYTYVAPMLAKLTGASDNFVA
CCCCCCCCCCHHHHEEEHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHH
LGLVLIGVGFTIGNHLGGKLADRSLDGATTTFLTALAVIMLVLPFALQSHVGAAVGLLVW
HHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAAAFAVVPPLQMRVMEAAAEAPGLASSINVGAFNLGNAVGAALGGGVISLGLGYAVVPV
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHCCHHHHHHCCHHHHHH
AGGLLAASGVLLVWLGRASKRAGQPVKA
HHHHHHHCCHHHEEECCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]