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The map label for this gene is mmgC [H]

Identifier: 94314276

GI number: 94314276

Start: 2078173

End: 2079324

Strand: Direct

Name: mmgC [H]

Synonym: Rmet_5357

Alternate gene names: 94314276

Gene position: 2078173-2079324 (Clockwise)

Preceding gene: 94314274

Following gene: 94314277

Centisome position: 80.55

GC content: 66.06

Gene sequence:

>1152_bases
TTGGAGATAGCCAGCAAGGTCGTGATACGGCCAGCCGATCCCGACGACGCCCTGACGCCGCTGCGTCAGGAAGTCCGCGC
ATTCCTGGCGGAGACCCTCGGCAACCGGCCACCCCAACTGCGCGCCAAGAGCTGGTCTGGCTACGATCCCGAATTCAGCC
GCGCGCTGGGTGCGCGTGGCTGGATCGGCATGACCTGGCCCAAGGCTTACGGCGGCAGTGAACGCTCGATGCTCGAGCGC
TACGTGGTGCTCGAGGAACTGCTCGCGGCGGGCGCGCCAGTTGGCGGCCACTGGGTTGCCGAGCGCCAGAGCGGCCCGCT
GCTGATGCGTTACGCGGACAAGAGCGTGGCGGCGGACATCGTGCCGCGCATCACGCGCGGAGAAGTGCGCTTCTGCATTG
GCATGAGCGAGCCGGACTCCGGTTCCGACCTGGCGTCGATCCGCACACGTGGCGATCGCGTGGATGGCGGATGGGTCATC
AACGGCACCAAGCTCTGGACCTCCAACGCGCATCATTCGCAATACATGATCGCGCTGGTGCGCACCGACCGTGGCGCGGA
CGACAAGCACAAGGGTCTGTCGCAGTTCCTGGTCGACATGACGTCGAGCGGCCTGCAGGTGCGCCCGATCAAGAACCTGG
CGGGTCACGAGGGCTTCAACGAGGTCGTGTTCGACAACGTCTTCGTGCCGGACCGGATGCTGATCGGCACCGAGGGCGAT
GGCTGGGCCCAGGTCACCGCGGAACTCACGTTCGAGCGCAGCGGCCCCGAACGCTATCTGAGCAGCTACGCGCTGCTGGC
CGAGATGGTGGATGCGGCAGACGCGACCGACTCGCGCCAGGCGGTGGAAATCGGCTACCTCGTCGCGGAGCTGAGCAATC
TGCGCCAGATGTCTCGCGGTATCGCGGCCATGCTCAATCGTGGCGAGAATCCGCAACTGGCCGCTGCCAACGTCAAGGAC
ATGGGCGCGCTGTTCGAACAGCGCATCCCTGAGGTGGCCCACGCGCTGTTCGGCAATGAACTGCGCCGCACCGGCTCCCC
GTTCGTCGCGACGCAAGCCTACCTGACCCAGAGTGTGCCCTCGTTCTCCCTGCGGGGCGGCACGCGTGAAATTCTGCGGG
GAATCATTGCGCGAGGACTGGGAATCCGATGA

Upstream 100 bases:

>100_bases
GCATGCGCGGTGAATTTCCGTTATCTCACGGCTGCGATAGGCGCGTCTGGAAGGCCACTGCTAACCTCGGCTCACTCTCA
AAAATCGCAAGGAGACAGAG

Downstream 100 bases:

>100_bases
ACGAACTCGAACAAATGCTGACCGACAGCGCGGAGCGCCTGTTCGGCAACGAGGTCACGCTCGAACAGTCCGAAGCGATG
GAGCGCGGCGAGTTTCCGCA

Product: putative Acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MEIASKVVIRPADPDDALTPLRQEVRAFLAETLGNRPPQLRAKSWSGYDPEFSRALGARGWIGMTWPKAYGGSERSMLER
YVVLEELLAAGAPVGGHWVAERQSGPLLMRYADKSVAADIVPRITRGEVRFCIGMSEPDSGSDLASIRTRGDRVDGGWVI
NGTKLWTSNAHHSQYMIALVRTDRGADDKHKGLSQFLVDMTSSGLQVRPIKNLAGHEGFNEVVFDNVFVPDRMLIGTEGD
GWAQVTAELTFERSGPERYLSSYALLAEMVDAADATDSRQAVEIGYLVAELSNLRQMSRGIAAMLNRGENPQLAAANVKD
MGALFEQRIPEVAHALFGNELRRTGSPFVATQAYLTQSVPSFSLRGGTREILRGIIARGLGIR

Sequences:

>Translated_383_residues
MEIASKVVIRPADPDDALTPLRQEVRAFLAETLGNRPPQLRAKSWSGYDPEFSRALGARGWIGMTWPKAYGGSERSMLER
YVVLEELLAAGAPVGGHWVAERQSGPLLMRYADKSVAADIVPRITRGEVRFCIGMSEPDSGSDLASIRTRGDRVDGGWVI
NGTKLWTSNAHHSQYMIALVRTDRGADDKHKGLSQFLVDMTSSGLQVRPIKNLAGHEGFNEVVFDNVFVPDRMLIGTEGD
GWAQVTAELTFERSGPERYLSSYALLAEMVDAADATDSRQAVEIGYLVAELSNLRQMSRGIAAMLNRGENPQLAAANVKD
MGALFEQRIPEVAHALFGNELRRTGSPFVATQAYLTQSVPSFSLRGGTREILRGIIARGLGIR
>Mature_383_residues
MEIASKVVIRPADPDDALTPLRQEVRAFLAETLGNRPPQLRAKSWSGYDPEFSRALGARGWIGMTWPKAYGGSERSMLER
YVVLEELLAAGAPVGGHWVAERQSGPLLMRYADKSVAADIVPRITRGEVRFCIGMSEPDSGSDLASIRTRGDRVDGGWVI
NGTKLWTSNAHHSQYMIALVRTDRGADDKHKGLSQFLVDMTSSGLQVRPIKNLAGHEGFNEVVFDNVFVPDRMLIGTEGD
GWAQVTAELTFERSGPERYLSSYALLAEMVDAADATDSRQAVEIGYLVAELSNLRQMSRGIAAMLNRGENPQLAAANVKD
MGALFEQRIPEVAHALFGNELRRTGSPFVATQAYLTQSVPSFSLRGGTREILRGIIARGLGIR

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=236, Percent_Identity=27.9661016949153, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI226958414, Length=206, Percent_Identity=28.6407766990291, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4501859, Length=208, Percent_Identity=29.3269230769231, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI4557233, Length=207, Percent_Identity=28.0193236714976, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI4501857, Length=235, Percent_Identity=24.2553191489362, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI87081958, Length=322, Percent_Identity=24.5341614906832, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786223, Length=283, Percent_Identity=24.7349823321555, Blast_Score=75, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538396, Length=244, Percent_Identity=28.2786885245902, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17506239, Length=223, Percent_Identity=27.3542600896861, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17551932, Length=204, Percent_Identity=27.9411764705882, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17508101, Length=186, Percent_Identity=28.494623655914, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17570075, Length=379, Percent_Identity=22.9551451187335, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI32563615, Length=186, Percent_Identity=29.0322580645161, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17505929, Length=205, Percent_Identity=25.8536585365854, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71990804, Length=200, Percent_Identity=25.5, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71985184, Length=131, Percent_Identity=32.824427480916, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI21355753, Length=206, Percent_Identity=29.6116504854369, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24666513, Length=293, Percent_Identity=25.5972696245734, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21356377, Length=251, Percent_Identity=27.0916334661355, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281363737, Length=214, Percent_Identity=28.5046728971963, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24646207, Length=280, Percent_Identity=27.1428571428571, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 41930; Mature: 41930

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00072 ACYL_COA_DH_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIASKVVIRPADPDDALTPLRQEVRAFLAETLGNRPPQLRAKSWSGYDPEFSRALGARG
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCC
WIGMTWPKAYGGSERSMLERYVVLEELLAAGAPVGGHWVAERQSGPLLMRYADKSVAADI
CEECCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCHHHHHHH
VPRITRGEVRFCIGMSEPDSGSDLASIRTRGDRVDGGWVINGTKLWTSNAHHSQYMIALV
HCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCEEEECEEEEECCCCCCEEEEEEE
RTDRGADDKHKGLSQFLVDMTSSGLQVRPIKNLAGHEGFNEVVFDNVFVPDRMLIGTEGD
ECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCHHHHCCEECCCEEEEECCCC
GWAQVTAELTFERSGPERYLSSYALLAEMVDAADATDSRQAVEIGYLVAELSNLRQMSRG
CCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAAMLNRGENPQLAAANVKDMGALFEQRIPEVAHALFGNELRRTGSPFVATQAYLTQSVP
HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
SFSLRGGTREILRGIIARGLGIR
CCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEIASKVVIRPADPDDALTPLRQEVRAFLAETLGNRPPQLRAKSWSGYDPEFSRALGARG
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCC
WIGMTWPKAYGGSERSMLERYVVLEELLAAGAPVGGHWVAERQSGPLLMRYADKSVAADI
CEECCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCHHHHHHH
VPRITRGEVRFCIGMSEPDSGSDLASIRTRGDRVDGGWVINGTKLWTSNAHHSQYMIALV
HCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCEEEECEEEEECCCCCCEEEEEEE
RTDRGADDKHKGLSQFLVDMTSSGLQVRPIKNLAGHEGFNEVVFDNVFVPDRMLIGTEGD
ECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCHHHHCCEECCCEEEEECCCC
GWAQVTAELTFERSGPERYLSSYALLAEMVDAADATDSRQAVEIGYLVAELSNLRQMSRG
CCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAAMLNRGENPQLAAANVKDMGALFEQRIPEVAHALFGNELRRTGSPFVATQAYLTQSVP
HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
SFSLRGGTREILRGIIARGLGIR
CCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8759838; 8969508; 9384377 [H]