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The map label for this gene is nodW [H]

Identifier: 94314237

GI number: 94314237

Start: 2024674

End: 2025417

Strand: Reverse

Name: nodW [H]

Synonym: Rmet_5318

Alternate gene names: 94314237

Gene position: 2025417-2024674 (Counterclockwise)

Preceding gene: 94314238

Following gene: 94314229

Centisome position: 78.5

GC content: 65.46

Gene sequence:

>744_bases
ATGCCGGGACGCATCGCGTGGCCGCTTGCATTTCAGGGGAAAGCGCCGATAATCCCACTTCCCGGAACAAATGCCCCCAG
GATCGCCATGACGCGCGACAGGATCGAAGAGGGTGGTGAAAGTGAAGAAAGCGCGGTGCTGGTCGTCGATGACGATCAGG
ATGTGCGCGTGGCGCTATCCAGCCTGTTCCGCTCGGCGGGACTCGCGGCGGAGTCGTTCGCCTCGGCCGAGGAATTGCTC
GCGCACGGCATTCCGGATCGGCCCACCTGCATCGTGCTCGATGTGCATCTGCATGGCGCGAGCGGCCTCGACCTGCAGGC
CACGCTCAACCGGGCGGGCCGCCATGCGTCGATCGTATTCATCTCCGGCCGTGGTGACGTCCCGATGACTGTGGCGGCCA
TGAAGGCCGGCGCCGTCAACTTCATCGCCAAGCCATTCCGCGACCAGGACCTGCTCGACGCGGTTGACGAGGCCTTGCAG
CGCGACCGGGCGCAGCGCGAGGCCGAGGCGCAGAGCCGGCAGCTTCGCGATCATTTCGACACCCTGACCGGCCGGGAGCA
GGAAGTCATGCAACTGGCGGCGCGTGGCCTGATGAACAAGCAGATCGCCGACGACCTCGGCATCAGCGAGGCCACGGTCA
AGATCTATCGCGGTCACGCCATGCGCAAGATGCAGGCCCGCACTTTCGCCGAACTGGTCATCATGGCCCAGTCTCTCGGG
CTGGTGCAGGACGACGCCGGATAG

Upstream 100 bases:

>100_bases
TGTTCATCGGCAAGAAGGAGACCTGACCGTAGACCTCAGACCGGCTTCTTGCCGGTAGCTTGTGACGCGCAACGGCCACG
TCGATGAGTCCCGGGACAGA

Downstream 100 bases:

>100_bases
CCCGCGCGTCAGATCCCCGACCCACTCTCGCCGCTGGCCAGCGCACGCGCCAGGCACCGGAGCAATTCTCTCTCCTGAAA
CGGCTTGCCGAGGAATCCGG

Product: LuxR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MPGRIAWPLAFQGKAPIIPLPGTNAPRIAMTRDRIEEGGESEESAVLVVDDDQDVRVALSSLFRSAGLAAESFASAEELL
AHGIPDRPTCIVLDVHLHGASGLDLQATLNRAGRHASIVFISGRGDVPMTVAAMKAGAVNFIAKPFRDQDLLDAVDEALQ
RDRAQREAEAQSRQLRDHFDTLTGREQEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQARTFAELVIMAQSLG
LVQDDAG

Sequences:

>Translated_247_residues
MPGRIAWPLAFQGKAPIIPLPGTNAPRIAMTRDRIEEGGESEESAVLVVDDDQDVRVALSSLFRSAGLAAESFASAEELL
AHGIPDRPTCIVLDVHLHGASGLDLQATLNRAGRHASIVFISGRGDVPMTVAAMKAGAVNFIAKPFRDQDLLDAVDEALQ
RDRAQREAEAQSRQLRDHFDTLTGREQEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQARTFAELVIMAQSLG
LVQDDAG
>Mature_246_residues
PGRIAWPLAFQGKAPIIPLPGTNAPRIAMTRDRIEEGGESEESAVLVVDDDQDVRVALSSLFRSAGLAAESFASAEELLA
HGIPDRPTCIVLDVHLHGASGLDLQATLNRAGRHASIVFISGRGDVPMTVAAMKAGAVNFIAKPFRDQDLLDAVDEALQR
DRAQREAEAQSRQLRDHFDTLTGREQEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQARTFAELVIMAQSLGL
VQDDAG

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: COG4566

COG function: function code T; Response regulator

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=146, Percent_Identity=33.5616438356164, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 26732; Mature: 26601

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRIAWPLAFQGKAPIIPLPGTNAPRIAMTRDRIEEGGESEESAVLVVDDDQDVRVALS
CCCCEECCEEECCCCCEEECCCCCCCEEEEEHHHHHCCCCCCCCEEEEEECCCHHHHHHH
SLFRSAGLAAESFASAEELLAHGIPDRPTCIVLDVHLHGASGLDLQATLNRAGRHASIVF
HHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEE
ISGRGDVPMTVAAMKAGAVNFIAKPFRDQDLLDAVDEALQRDRAQREAEAQSRQLRDHFD
EECCCCCCEEHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTGREQEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQARTFAELVIMAQSLG
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LVQDDAG
CCCCCCC
>Mature Secondary Structure 
PGRIAWPLAFQGKAPIIPLPGTNAPRIAMTRDRIEEGGESEESAVLVVDDDQDVRVALS
CCCEECCEEECCCCCEEECCCCCCCEEEEEHHHHHCCCCCCCCEEEEEECCCHHHHHHH
SLFRSAGLAAESFASAEELLAHGIPDRPTCIVLDVHLHGASGLDLQATLNRAGRHASIVF
HHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEE
ISGRGDVPMTVAAMKAGAVNFIAKPFRDQDLLDAVDEALQRDRAQREAEAQSRQLRDHFD
EECCCCCCEEHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTGREQEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQARTFAELVIMAQSLG
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LVQDDAG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]