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The map label for this gene is nodW [H]

Identifier: 94314229

GI number: 94314229

Start: 2017292

End: 2017978

Strand: Reverse

Name: nodW [H]

Synonym: Rmet_5310

Alternate gene names: 94314229

Gene position: 2017978-2017292 (Counterclockwise)

Preceding gene: 94314237

Following gene: 94314228

Centisome position: 78.21

GC content: 65.36

Gene sequence:

>687_bases
GTGACTTCTACTTGCCTGGAACCCGCCGCAAGTGCCGAGTACGAACCTGGCACGGTACTCGTGCTGGACGACGACGCCAT
GGTGCTCGACGCGCTCGGCGGCCTCTTTCGCTCGCTGGACATGGATGTGGCGCTGTTCGCATCGGAAGCCGAGCTGATGG
CCTATCCGCTTCCCGATACGCCGTGCTGCCTGCTGCTAGACGTCAGGCTGGGCGGCGCCAGCGGGCTTGATCTGCAGTCG
CGGCTCGGCCAGTCCGGCGTGGGGATGCCGATCATCTTCATGACGGGGTATGGCGATGTGGCGATGACGGCGGCCGCAAT
GAAGGCGGGCGCGGTGGATTTCCTGACCAAGCCGATTCTGGAGACGTCGCTGATTGCCGCCGTGTCCGCCGCCCTTGACA
GGGACAGGTCGCGGCGGCGTGGGATGCGCAGGACCGATGCGATCCGTCGCGGCTTTGCCACGCTGACACCACGCGAGGCG
GAAGTCATGGGTATGGCGGTGTCCGGCCTGCTGAACAAGCAGATTGCGGGCGAGATCGGCATCAGCGAAGTGACGGTCAA
GATTCACCGGGGCCAGGCCATGCGCAAGATGAACGCGCGCTCCTTTGCGGATCTGGTGCTGATGGGTCAGGAACTCGGCC
TTTACAGGGATGCCGCGCGGCGGGCACGCCAGTTCGCCGACGCATAG

Upstream 100 bases:

>100_bases
ACTACGACATTGGTATGGGTGGCACGCATCCGGGCGCTATGCTGAAATGCACCGCATTGGCGCGCCGGCGCATGGACCAT
GAACTTCCTGTGACATTGCC

Downstream 100 bases:

>100_bases
CAGTTGACCACCAAACGCGCAATACACGTATTGCGGGGGCACGGCTAGAATGCGTGACGACGCACTCGCCTCCACGAGCC
AGCCCATCGCCACCAGCATG

Product: LuxR family two component transcriptional regulator (receiver domain CheY-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTSTCLEPAASAEYEPGTVLVLDDDAMVLDALGGLFRSLDMDVALFASEAELMAYPLPDTPCCLLLDVRLGGASGLDLQS
RLGQSGVGMPIIFMTGYGDVAMTAAAMKAGAVDFLTKPILETSLIAAVSAALDRDRSRRRGMRRTDAIRRGFATLTPREA
EVMGMAVSGLLNKQIAGEIGISEVTVKIHRGQAMRKMNARSFADLVLMGQELGLYRDAARRARQFADA

Sequences:

>Translated_228_residues
MTSTCLEPAASAEYEPGTVLVLDDDAMVLDALGGLFRSLDMDVALFASEAELMAYPLPDTPCCLLLDVRLGGASGLDLQS
RLGQSGVGMPIIFMTGYGDVAMTAAAMKAGAVDFLTKPILETSLIAAVSAALDRDRSRRRGMRRTDAIRRGFATLTPREA
EVMGMAVSGLLNKQIAGEIGISEVTVKIHRGQAMRKMNARSFADLVLMGQELGLYRDAARRARQFADA
>Mature_227_residues
TSTCLEPAASAEYEPGTVLVLDDDAMVLDALGGLFRSLDMDVALFASEAELMAYPLPDTPCCLLLDVRLGGASGLDLQSR
LGQSGVGMPIIFMTGYGDVAMTAAAMKAGAVDFLTKPILETSLIAAVSAALDRDRSRRRGMRRTDAIRRGFATLTPREAE
VMGMAVSGLLNKQIAGEIGISEVTVKIHRGQAMRKMNARSFADLVLMGQELGLYRDAARRARQFADA

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: COG4566

COG function: function code T; Response regulator

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=159, Percent_Identity=34.5911949685535, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24364; Mature: 24232

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTCLEPAASAEYEPGTVLVLDDDAMVLDALGGLFRSLDMDVALFASEAELMAYPLPDT
CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCC
PCCLLLDVRLGGASGLDLQSRLGQSGVGMPIIFMTGYGDVAMTAAAMKAGAVDFLTKPIL
CEEEEEEEEECCCCCCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCHHHHHHHHHH
ETSLIAAVSAALDRDRSRRRGMRRTDAIRRGFATLTPREAEVMGMAVSGLLNKQIAGEIG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
ISEVTVKIHRGQAMRKMNARSFADLVLMGQELGLYRDAARRARQFADA
CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSTCLEPAASAEYEPGTVLVLDDDAMVLDALGGLFRSLDMDVALFASEAELMAYPLPDT
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCC
PCCLLLDVRLGGASGLDLQSRLGQSGVGMPIIFMTGYGDVAMTAAAMKAGAVDFLTKPIL
CEEEEEEEEECCCCCCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCHHHHHHHHHH
ETSLIAAVSAALDRDRSRRRGMRRTDAIRRGFATLTPREAEVMGMAVSGLLNKQIAGEIG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
ISEVTVKIHRGQAMRKMNARSFADLVLMGQELGLYRDAARRARQFADA
CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]