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The map label for this gene is caiB [H]

Identifier: 94314067

GI number: 94314067

Start: 1846112

End: 1847335

Strand: Reverse

Name: caiB [H]

Synonym: Rmet_5148

Alternate gene names: 94314067

Gene position: 1847335-1846112 (Counterclockwise)

Preceding gene: 94314071

Following gene: 94314066

Centisome position: 71.6

GC content: 61.44

Gene sequence:

>1224_bases
ATGAGCAAGGCGCTTGGCCATATCAAGGTGCTGGACCTGTCCCGTGTGCTGGCCGGACCCTGGGCCACCCAGAATCTGGC
GGACATGGGGGCCGAAGTCATCAAGGTGGAGCGACCTGGCGCCGGCGACGACACGCGCGGCTGGGGGCCGCCGTTCCTGA
AGGACCCGCAAGGCAACGAGACCGATGATTCGTCGTACTTCCTCAGCGCAAACCGGGGCAAGAAATCGATCACGATCGAC
CTTGCATCGCCAAAGGGCCAGGACATCATCCGGGCGCTGGCCCGCGAATGCGATGTTGTGGTCGAGAACTACAAGGTGGG
CACGCTGGCTCGCTATGGCCTGTCCTACGAAGACCTGCGCAAGCTCAACCCGCGTCTGGTGTACTGCTCGATCACGGGAT
TCGGTCAGACCGGGCCCTATGCGGCATTGCCGGGCTACGACTTCGTTTTCCAGGGTATGGGCGGTCTGATGAGCATCACC
GGGATGCCGGATGGCGAGCCCGGCGCCGGCCCGGTGAAATCCGGCATCGCCATCACAGATCTGCTCACCGGCATGTACGC
CACATCGGCCATCCTTGCCGCGCTTGAGCACCGGAACGTCAGCGGAGAGGGCCAATACATCGATATCTCGTTGCTCGATT
GCGTGGTCACCATCAATTCGTACCAGGCCATCAACTACTTTCTGTCCGGCAAGGTCCCCCAGCGGATGGGCAATGCGCAC
TCGAACATGGTGCCGTACCAGGTATTCCGCTGCAAAGAGGGTGACGTCATCGTGGCGGTCGGCAACGACACCCAGTACGC
GGCGTTCTGCGGCGTCATCGGGCGTCCCGATCTGGCGGAAGATGCCCGATTTACCACTGCAGCACAGCGCAACCGAAATC
GGGAGACGCTGATTCCCCAGGTTGCCGAGGCGATGCTGGCCAGAACCATGACGGAATGGGTGACGCTGATGGAAGCGGCG
AACGTGCCTTGCGGACCGATCTACAACATGAAACAGGTGTTCGAAGACCCGCAGGTCAGGCATCGGGACATGCAGCTCGT
TCTGGAGCACAGCAGCGGTTCGAAAGCCCCATCGCTTGCGAATCCGATTCGTTTCTCCGATACGCCGATTCGCTACCAAC
GCTCCGCGCCAACCCTGGGTGAACACACCGACAGGGTTCTGCAGGACATGCTTGCCTTTTCAGCCGAGACCATCGACGCC
TTGAGGGAGCAGGGCGTGATCTGA

Upstream 100 bases:

>100_bases
TGATAAACGCAGCTTATCGAAGTCTCGCGAATCGCTATTGGACGCGGCGTTGGCACGTGGCTACGCTCATCGCTACAACT
CGAAAGCAGGAGACAACGAC

Downstream 100 bases:

>100_bases
TCGTTGTACCCAAAACAAAACTCAAGGAGACAAGATGCTGCATTCCGCAAAGATGCTTTTCCTGGCTGTTGCCGTGTTCG
CCGTGTCAAATGCCGCGTCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSKALGHIKVLDLSRVLAGPWATQNLADMGAEVIKVERPGAGDDTRGWGPPFLKDPQGNETDDSSYFLSANRGKKSITID
LASPKGQDIIRALARECDVVVENYKVGTLARYGLSYEDLRKLNPRLVYCSITGFGQTGPYAALPGYDFVFQGMGGLMSIT
GMPDGEPGAGPVKSGIAITDLLTGMYATSAILAALEHRNVSGEGQYIDISLLDCVVTINSYQAINYFLSGKVPQRMGNAH
SNMVPYQVFRCKEGDVIVAVGNDTQYAAFCGVIGRPDLAEDARFTTAAQRNRNRETLIPQVAEAMLARTMTEWVTLMEAA
NVPCGPIYNMKQVFEDPQVRHRDMQLVLEHSSGSKAPSLANPIRFSDTPIRYQRSAPTLGEHTDRVLQDMLAFSAETIDA
LREQGVI

Sequences:

>Translated_407_residues
MSKALGHIKVLDLSRVLAGPWATQNLADMGAEVIKVERPGAGDDTRGWGPPFLKDPQGNETDDSSYFLSANRGKKSITID
LASPKGQDIIRALARECDVVVENYKVGTLARYGLSYEDLRKLNPRLVYCSITGFGQTGPYAALPGYDFVFQGMGGLMSIT
GMPDGEPGAGPVKSGIAITDLLTGMYATSAILAALEHRNVSGEGQYIDISLLDCVVTINSYQAINYFLSGKVPQRMGNAH
SNMVPYQVFRCKEGDVIVAVGNDTQYAAFCGVIGRPDLAEDARFTTAAQRNRNRETLIPQVAEAMLARTMTEWVTLMEAA
NVPCGPIYNMKQVFEDPQVRHRDMQLVLEHSSGSKAPSLANPIRFSDTPIRYQRSAPTLGEHTDRVLQDMLAFSAETIDA
LREQGVI
>Mature_406_residues
SKALGHIKVLDLSRVLAGPWATQNLADMGAEVIKVERPGAGDDTRGWGPPFLKDPQGNETDDSSYFLSANRGKKSITIDL
ASPKGQDIIRALARECDVVVENYKVGTLARYGLSYEDLRKLNPRLVYCSITGFGQTGPYAALPGYDFVFQGMGGLMSITG
MPDGEPGAGPVKSGIAITDLLTGMYATSAILAALEHRNVSGEGQYIDISLLDCVVTINSYQAINYFLSGKVPQRMGNAHS
NMVPYQVFRCKEGDVIVAVGNDTQYAAFCGVIGRPDLAEDARFTTAAQRNRNRETLIPQVAEAMLARTMTEWVTLMEAAN
VPCGPIYNMKQVFEDPQVRHRDMQLVLEHSSGSKAPSLANPIRFSDTPIRYQRSAPTLGEHTDRVLQDMLAFSAETIDAL
REQGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=405, Percent_Identity=44.9382716049383, Blast_Score=362, Evalue=1e-100,
Organism=Homo sapiens, GI300863124, Length=431, Percent_Identity=42.2273781902552, Blast_Score=348, Evalue=7e-96,
Organism=Homo sapiens, GI300863126, Length=405, Percent_Identity=40, Blast_Score=300, Evalue=2e-81,
Organism=Homo sapiens, GI13376042, Length=431, Percent_Identity=37.8190255220418, Blast_Score=294, Evalue=1e-79,
Organism=Homo sapiens, GI266456254, Length=406, Percent_Identity=25.3694581280788, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI42794625, Length=406, Percent_Identity=25.3694581280788, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI266458397, Length=265, Percent_Identity=28.6792452830189, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=28.6792452830189, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=33.5526315789474, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=33.5526315789474, Blast_Score=95, Evalue=9e-20,
Organism=Escherichia coli, GI87082093, Length=382, Percent_Identity=34.8167539267016, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1788717, Length=430, Percent_Identity=32.093023255814, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1786222, Length=415, Percent_Identity=24.8192771084337, Blast_Score=101, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=24.4117647058824, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=263, Percent_Identity=25.0950570342205, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=42.5, Blast_Score=329, Evalue=2e-90,
Organism=Drosophila melanogaster, GI24585488, Length=362, Percent_Identity=25.6906077348066, Blast_Score=115, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44332; Mature: 44201

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKALGHIKVLDLSRVLAGPWATQNLADMGAEVIKVERPGAGDDTRGWGPPFLKDPQGNE
CCCCCCCEEEEEHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
TDDSSYFLSANRGKKSITIDLASPKGQDIIRALARECDVVVENYKVGTLARYGLSYEDLR
CCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHH
KLNPRLVYCSITGFGQTGPYAALPGYDFVFQGMGGLMSITGMPDGEPGAGPVKSGIAITD
HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCHHHH
LLTGMYATSAILAALEHRNVSGEGQYIDISLLDCVVTINSYQAINYFLSGKVPQRMGNAH
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHHCCHHEEHHHHCCCCHHHHCCCC
SNMVPYQVFRCKEGDVIVAVGNDTQYAAFCGVIGRPDLAEDARFTTAAQRNRNRETLIPQ
CCCCCEEEEEECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
VAEAMLARTMTEWVTLMEAANVPCGPIYNMKQVFEDPQVRHRDMQLVLEHSSGSKAPSLA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHCCEEEEEECCCCCCCCCCC
NPIRFSDTPIRYQRSAPTLGEHTDRVLQDMLAFSAETIDALREQGVI
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKALGHIKVLDLSRVLAGPWATQNLADMGAEVIKVERPGAGDDTRGWGPPFLKDPQGNE
CCCCCCEEEEEHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
TDDSSYFLSANRGKKSITIDLASPKGQDIIRALARECDVVVENYKVGTLARYGLSYEDLR
CCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHH
KLNPRLVYCSITGFGQTGPYAALPGYDFVFQGMGGLMSITGMPDGEPGAGPVKSGIAITD
HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCHHHH
LLTGMYATSAILAALEHRNVSGEGQYIDISLLDCVVTINSYQAINYFLSGKVPQRMGNAH
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHHCCHHEEHHHHCCCCHHHHCCCC
SNMVPYQVFRCKEGDVIVAVGNDTQYAAFCGVIGRPDLAEDARFTTAAQRNRNRETLIPQ
CCCCCEEEEEECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
VAEAMLARTMTEWVTLMEAANVPCGPIYNMKQVFEDPQVRHRDMQLVLEHSSGSKAPSLA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHCCEEEEEECCCCCCCCCCC
NPIRFSDTPIRYQRSAPTLGEHTDRVLQDMLAFSAETIDALREQGVI
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]