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The map label for this gene is yngJ [H]

Identifier: 94314061

GI number: 94314061

Start: 1840340

End: 1841518

Strand: Reverse

Name: yngJ [H]

Synonym: Rmet_5142

Alternate gene names: 94314061

Gene position: 1841518-1840340 (Counterclockwise)

Preceding gene: 94314062

Following gene: 94314060

Centisome position: 71.37

GC content: 66.58

Gene sequence:

>1179_bases
ATGGCCGGCGCGGAACAGAATGACTGTGTCTCATCTCCACCGAGGAGCCAACACGTGGATTTTCGCTTCAGCGAGGAACA
GGCCATGCTGCGCGACACGCTCGCGCGCTACCTGTCCGATCACTACACGTTCGATGCGCGCCAGGCTGCCGTGCATTCGG
CCGCCGGCTGGCGTCCCGATTGCTGGCGCGCGTTCGCGCGCGACCTTGGCCTGCTTGGCATCGGGATTCCCGAGCGCTTC
GGTGGGCTGGGCGGCGGCATCATCGACCACATCGTGGTGATGGAACAGTTCGGCCGCCATCTTGTGCTGGAGCCCTACCT
TGGCACGGCCATCCTTGCGGTTGATGCACTGCAATATGCCAATGAGACGCTGGCCGCCGAAGCGCTGCCCGCCATCGCGG
CAGGCGAACTGGTGGTCGGCTGGGCGCACGCCGAACCGGAATCGCGCTACGGAATGATGGTGCGAACACGCGCGGATGCG
GCTGCCGGCGGTTACCGGTTGCATGGACGCAAGGCGCTTGTCACCGGCGCGCCCTGGGCCACGCACTTCATTGTCAGCGC
GAACACGGAAGCCGGTCCGACGCTGTTCTGGGTCGAACGCACGGCGCCGGGCCTGACGTTGATCGAAGCCCCCACCTTTG
ACGGCGGCCGTACTGCTGACCTGATACTGACCGACGTGCCGGTGAGCGCCGCACAAGTGCTGGGAATGCCTGGCGGCGCA
TTGCCGCTGCTGGAGCAACTGGGCGACACCGCCGCCGTCGCGCTGTGTGCCGAAGCCACCGGCGCCACGGCGCGAATGCT
GGAGAACACCATCGAGTACGCGCGTCAGCGCCAGCAGTTCGGGCAGGCGATCGGCAGCTTCCAGGCGCTGCAGCATCGCA
TGGCCGACATGTACATGTTGCACGAGCAGGCCGTCGCCCTCACACAGGTGGCTGCCATGCGTCTTGCTGGCGAGCCACAT
GAACGGGCGCTGGGTGCCAGCACCGCCAAGGCCCATGTCGACGAAGCAGGCCGCCGCATCGGGCAGGGCGCGGTGCAGAT
CCACGGCGGCATGGGCGTGACCGAGGAAACGGCGGTCGGCCACTACTTCAAGCGTGTCACCGCCATCGGCCTGCAGTTCG
GCAACGTTGCCTACCATCTGCGCCGTTGTGTCGACCTGCGCTACCCGGCCAACGCATAA

Upstream 100 bases:

>100_bases
GGGGCGCGATGGCGTGAAGGTGAGCGATTTCGCACGTCAGGTCTAGGCGTTCGGGTGCACTTGTTGTCTGGCGCGAATAG
TTCGTTCGAACGTCGCCGGC

Downstream 100 bases:

>100_bases
GGACCGCCATGGATATCGACGAGTCTCCGCAAGACCTGCAGTTTCGCGCCGAGGTGCGCGCCTGGATCTCCGAAGCGTTT
GATGACGAGCTTCGCGCCAT

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MAGAEQNDCVSSPPRSQHVDFRFSEEQAMLRDTLARYLSDHYTFDARQAAVHSAAGWRPDCWRAFARDLGLLGIGIPERF
GGLGGGIIDHIVVMEQFGRHLVLEPYLGTAILAVDALQYANETLAAEALPAIAAGELVVGWAHAEPESRYGMMVRTRADA
AAGGYRLHGRKALVTGAPWATHFIVSANTEAGPTLFWVERTAPGLTLIEAPTFDGGRTADLILTDVPVSAAQVLGMPGGA
LPLLEQLGDTAAVALCAEATGATARMLENTIEYARQRQQFGQAIGSFQALQHRMADMYMLHEQAVALTQVAAMRLAGEPH
ERALGASTAKAHVDEAGRRIGQGAVQIHGGMGVTEETAVGHYFKRVTAIGLQFGNVAYHLRRCVDLRYPANA

Sequences:

>Translated_392_residues
MAGAEQNDCVSSPPRSQHVDFRFSEEQAMLRDTLARYLSDHYTFDARQAAVHSAAGWRPDCWRAFARDLGLLGIGIPERF
GGLGGGIIDHIVVMEQFGRHLVLEPYLGTAILAVDALQYANETLAAEALPAIAAGELVVGWAHAEPESRYGMMVRTRADA
AAGGYRLHGRKALVTGAPWATHFIVSANTEAGPTLFWVERTAPGLTLIEAPTFDGGRTADLILTDVPVSAAQVLGMPGGA
LPLLEQLGDTAAVALCAEATGATARMLENTIEYARQRQQFGQAIGSFQALQHRMADMYMLHEQAVALTQVAAMRLAGEPH
ERALGASTAKAHVDEAGRRIGQGAVQIHGGMGVTEETAVGHYFKRVTAIGLQFGNVAYHLRRCVDLRYPANA
>Mature_391_residues
AGAEQNDCVSSPPRSQHVDFRFSEEQAMLRDTLARYLSDHYTFDARQAAVHSAAGWRPDCWRAFARDLGLLGIGIPERFG
GLGGGIIDHIVVMEQFGRHLVLEPYLGTAILAVDALQYANETLAAEALPAIAAGELVVGWAHAEPESRYGMMVRTRADAA
AGGYRLHGRKALVTGAPWATHFIVSANTEAGPTLFWVERTAPGLTLIEAPTFDGGRTADLILTDVPVSAAQVLGMPGGAL
PLLEQLGDTAAVALCAEATGATARMLENTIEYARQRQQFGQAIGSFQALQHRMADMYMLHEQAVALTQVAAMRLAGEPHE
RALGASTAKAHVDEAGRRIGQGAVQIHGGMGVTEETAVGHYFKRVTAIGLQFGNVAYHLRRCVDLRYPANA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=358, Percent_Identity=28.2122905027933, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI226958414, Length=353, Percent_Identity=27.7620396600567, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI4557233, Length=315, Percent_Identity=29.5238095238095, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI4501859, Length=383, Percent_Identity=25.065274151436, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI4557231, Length=371, Percent_Identity=25.3369272237197, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI187960098, Length=371, Percent_Identity=25.3369272237197, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI76496475, Length=358, Percent_Identity=24.0223463687151, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI4557235, Length=358, Percent_Identity=24.0223463687151, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI21361497, Length=324, Percent_Identity=25.6172839506173, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI4501857, Length=353, Percent_Identity=22.0963172804533, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI7656849, Length=313, Percent_Identity=24.2811501597444, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081958, Length=370, Percent_Identity=23.2432432432432, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786223, Length=366, Percent_Identity=22.6775956284153, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538396, Length=362, Percent_Identity=26.5193370165746, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17569725, Length=361, Percent_Identity=27.4238227146814, Blast_Score=111, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17570075, Length=359, Percent_Identity=27.5766016713092, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17508101, Length=343, Percent_Identity=26.8221574344023, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17534899, Length=364, Percent_Identity=26.0989010989011, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17506239, Length=310, Percent_Identity=26.4516129032258, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71990804, Length=269, Percent_Identity=26.7657992565056, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71985184, Length=248, Percent_Identity=24.5967741935484, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32563615, Length=245, Percent_Identity=24.0816326530612, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17533517, Length=267, Percent_Identity=22.4719101123595, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17505929, Length=325, Percent_Identity=25.2307692307692, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17551932, Length=324, Percent_Identity=23.7654320987654, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21355753, Length=360, Percent_Identity=27.7777777777778, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21356377, Length=321, Percent_Identity=28.9719626168224, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24646207, Length=316, Percent_Identity=28.4810126582279, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24666513, Length=387, Percent_Identity=24.5478036175711, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI281363737, Length=346, Percent_Identity=25.7225433526012, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24660351, Length=353, Percent_Identity=26.0623229461756, Blast_Score=86, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42048; Mature: 41917

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGAEQNDCVSSPPRSQHVDFRFSEEQAMLRDTLARYLSDHYTFDARQAAVHSAAGWRPD
CCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHH
CWRAFARDLGLLGIGIPERFGGLGGGIIDHIVVMEQFGRHLVLEPYLGTAILAVDALQYA
HHHHHHHHCCEEECCCHHHHCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
NETLAAEALPAIAAGELVVGWAHAEPESRYGMMVRTRADAAAGGYRLHGRKALVTGAPWA
HHHHHHHHHCHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEECCEEEEECCCCC
THFIVSANTEAGPTLFWVERTAPGLTLIEAPTFDGGRTADLILTDVPVSAAQVLGMPGGA
EEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCH
LPLLEQLGDTAAVALCAEATGATARMLENTIEYARQRQQFGQAIGSFQALQHRMADMYML
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HEQAVALTQVAAMRLAGEPHERALGASTAKAHVDEAGRRIGQGAVQIHGGMGVTEETAVG
HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
HYFKRVTAIGLQFGNVAYHLRRCVDLRYPANA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AGAEQNDCVSSPPRSQHVDFRFSEEQAMLRDTLARYLSDHYTFDARQAAVHSAAGWRPD
CCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHH
CWRAFARDLGLLGIGIPERFGGLGGGIIDHIVVMEQFGRHLVLEPYLGTAILAVDALQYA
HHHHHHHHCCEEECCCHHHHCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
NETLAAEALPAIAAGELVVGWAHAEPESRYGMMVRTRADAAAGGYRLHGRKALVTGAPWA
HHHHHHHHHCHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEECCEEEEECCCCC
THFIVSANTEAGPTLFWVERTAPGLTLIEAPTFDGGRTADLILTDVPVSAAQVLGMPGGA
EEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCH
LPLLEQLGDTAAVALCAEATGATARMLENTIEYARQRQQFGQAIGSFQALQHRMADMYML
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HEQAVALTQVAAMRLAGEPHERALGASTAKAHVDEAGRRIGQGAVQIHGGMGVTEETAVG
HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
HYFKRVTAIGLQFGNVAYHLRRCVDLRYPANA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]