Click here to switch to the map view.

The map label for this gene is yjjN [C]

Identifier: 94314021

GI number: 94314021

Start: 1793828

End: 1794904

Strand: Direct

Name: yjjN [C]

Synonym: Rmet_5102

Alternate gene names: 94314021

Gene position: 1793828-1794904 (Clockwise)

Preceding gene: 94314017

Following gene: 291481557

Centisome position: 69.53

GC content: 67.32

Gene sequence:

>1077_bases
ATGAAAGCCTGGATGCTCGACCAACCCGGCCAGCCGCTTGTCCTGCGTGACATCGACACGCCCCATGCCCGCCCCGGCGC
GGTGCTCGTACGCATGGAAGCGGTGCCGCTGCTCAGCTACACGCGCGACTACCTGAACGGCGCGCTGCCTTACGCCTACC
CGCCCGGTCCTTTCACCCCCGGTACAAACGGCGTTGGCACGATCATCGAAACCGGAGCGGGTGTCCATCACTTCCGGGCC
GGACAACGCGTGGCCGTCAACCCGTACCTGACCAGCACGGAAAGCGTCGATGCACCGGCCGAAATCCTGATTGGCCTGAC
CGGCATCAGCGCGGACAGCGGCCCCCTGCTTCAGGACTTCCCACACGGAACGCTACGAGAGGTCGCCGAGTTTCCCGCTG
CGGCACTTGTCCCCCTCGACGGGCTGGATCGCCTTTCGTCCGACCAGCTGGCCACCCTGTCGAAGTTCGCCATTCCTTTC
GGCGGCCTGCGTCGCGGCCGGCTGGTTGCGGGCGAGACCGTCGCGATCAACGGCGCAACGGGCGCGTTCGGATCAGCCGC
CGTGCTTGCCGCGCTGGCGATGGGCGCTTCGACCGTACTCGCACTGGGACGCCGCGCTGGCCCGCTCGAATCCCTGGCCC
GGATGGGCGACGGCCGGGTGGTGCCGGTAGTGATGACCGGTGATGAGGGGGTCGACAGCGCCGCCATCCGCAGTGCGGCA
TCCGGCGGCGTCGACCTGGCATTCGACATGGTTGGTCAGGCTACCTCGCCAAACAGTACGCTCGCGGCGCTGCTGAGCCT
GAAGCGGCGCGGTCGCATGGTGCTGATGGGCAGCATGACCGTGCCGCTGCCACTGCCCTACGGCGCCATGCTACGCAATG
GCTGGGAGCTGATCGGCCACTTCATGTACGCATCCGCCGACTACCGCGCGCTGGTGGCAATGGTTCGCGCCGGCCAGCTT
TCACTCGATGCAATCCACGTGAAGCGCTTCCCGTTCGACGCCATAGAGCAGGCGATCGATGCGGCGGGCACGCTGGCTGG
GCTAGAGGCAGCGGTGGTGACGTTCCCACACGACTGA

Upstream 100 bases:

>100_bases
CTTATACCTCTTATATCTGTCATCGATTTCAAAGATAGGTCGCGAGCCCCTACAGTTCAAGCCAGCCAACCGGCGGACAC
CCCAATCAAGGAGCCCCGAT

Downstream 100 bases:

>100_bases
GACGCATCGCGGCGGGGGATTCGCCACGACAAACCTGGCGGAGGATAGCCGGCCGCCCCTCTCACCCGTTCACGCGTCAG
GCCACCCGGTACGTCGACTG

Product: putative alcohol dehydrogenase, zinc-binding

Products: NA

Alternate protein names: Xylitol dehydrogenase; XDH [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKAWMLDQPGQPLVLRDIDTPHARPGAVLVRMEAVPLLSYTRDYLNGALPYAYPPGPFTPGTNGVGTIIETGAGVHHFRA
GQRVAVNPYLTSTESVDAPAEILIGLTGISADSGPLLQDFPHGTLREVAEFPAAALVPLDGLDRLSSDQLATLSKFAIPF
GGLRRGRLVAGETVAINGATGAFGSAAVLAALAMGASTVLALGRRAGPLESLARMGDGRVVPVVMTGDEGVDSAAIRSAA
SGGVDLAFDMVGQATSPNSTLAALLSLKRRGRMVLMGSMTVPLPLPYGAMLRNGWELIGHFMYASADYRALVAMVRAGQL
SLDAIHVKRFPFDAIEQAIDAAGTLAGLEAAVVTFPHD

Sequences:

>Translated_358_residues
MKAWMLDQPGQPLVLRDIDTPHARPGAVLVRMEAVPLLSYTRDYLNGALPYAYPPGPFTPGTNGVGTIIETGAGVHHFRA
GQRVAVNPYLTSTESVDAPAEILIGLTGISADSGPLLQDFPHGTLREVAEFPAAALVPLDGLDRLSSDQLATLSKFAIPF
GGLRRGRLVAGETVAINGATGAFGSAAVLAALAMGASTVLALGRRAGPLESLARMGDGRVVPVVMTGDEGVDSAAIRSAA
SGGVDLAFDMVGQATSPNSTLAALLSLKRRGRMVLMGSMTVPLPLPYGAMLRNGWELIGHFMYASADYRALVAMVRAGQL
SLDAIHVKRFPFDAIEQAIDAAGTLAGLEAAVVTFPHD
>Mature_358_residues
MKAWMLDQPGQPLVLRDIDTPHARPGAVLVRMEAVPLLSYTRDYLNGALPYAYPPGPFTPGTNGVGTIIETGAGVHHFRA
GQRVAVNPYLTSTESVDAPAEILIGLTGISADSGPLLQDFPHGTLREVAEFPAAALVPLDGLDRLSSDQLATLSKFAIPF
GGLRRGRLVAGETVAINGATGAFGSAAVLAALAMGASTVLALGRRAGPLESLARMGDGRVVPVVMTGDEGVDSAAIRSAA
SGGVDLAFDMVGQATSPNSTLAALLSLKRRGRMVLMGSMTVPLPLPYGAMLRNGWELIGHFMYASADYRALVAMVRAGQL
SLDAIHVKRFPFDAIEQAIDAAGTLAGLEAAVVTFPHD

Specific function: Unknown

COG id: COG1063

COG function: function code ER; Threonine dehydrogenase and related Zn-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the zinc-containing alcohol dehydrogenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR013154
- InterPro:   IPR002085
- InterPro:   IPR002328
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]

EC number: =1.1.1.9 [H]

Molecular weight: Translated: 37246; Mature: 37246

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWMLDQPGQPLVLRDIDTPHARPGAVLVRMEAVPLLSYTRDYLNGALPYAYPPGPFTP
CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCC
GTNGVGTIIETGAGVHHFRAGQRVAVNPYLTSTESVDAPAEILIGLTGISADSGPLLQDF
CCCCCCHHEECCCCHHHHCCCCEEEECCCCCCCCCCCCCHHEEEEEECCCCCCCCCHHHC
PHGTLREVAEFPAAALVPLDGLDRLSSDQLATLSKFAIPFGGLRRGRLVAGETVAINGAT
CCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCC
GAFGSAAVLAALAMGASTVLALGRRAGPLESLARMGDGRVVPVVMTGDEGVDSAAIRSAA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHC
SGGVDLAFDMVGQATSPNSTLAALLSLKRRGRMVLMGSMTVPLPLPYGAMLRNGWELIGH
CCCCEEEHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
FMYASADYRALVAMVRAGQLSLDAIHVKRFPFDAIEQAIDAAGTLAGLEAAVVTFPHD
HHHCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCC
>Mature Secondary Structure
MKAWMLDQPGQPLVLRDIDTPHARPGAVLVRMEAVPLLSYTRDYLNGALPYAYPPGPFTP
CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCC
GTNGVGTIIETGAGVHHFRAGQRVAVNPYLTSTESVDAPAEILIGLTGISADSGPLLQDF
CCCCCCHHEECCCCHHHHCCCCEEEECCCCCCCCCCCCCHHEEEEEECCCCCCCCCHHHC
PHGTLREVAEFPAAALVPLDGLDRLSSDQLATLSKFAIPFGGLRRGRLVAGETVAINGAT
CCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCC
GAFGSAAVLAALAMGASTVLALGRRAGPLESLARMGDGRVVPVVMTGDEGVDSAAIRSAA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHC
SGGVDLAFDMVGQATSPNSTLAALLSLKRRGRMVLMGSMTVPLPLPYGAMLRNGWELIGH
CCCCEEEHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
FMYASADYRALVAMVRAGQLSLDAIHVKRFPFDAIEQAIDAAGTLAGLEAAVVTFPHD
HHHCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]