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The map label for this gene is nahR [H]

Identifier: 94314020

GI number: 94314020

Start: 1792803

End: 1793750

Strand: Reverse

Name: nahR [H]

Synonym: Rmet_5101

Alternate gene names: 94314020

Gene position: 1793750-1792803 (Counterclockwise)

Preceding gene: 94314022

Following gene: 94314019

Centisome position: 69.52

GC content: 63.61

Gene sequence:

>948_bases
ATGACAGATATAAGAGGTATAAGTGTGGTTGATTTCAAGGGCGTGGATCTGAATCTTCTGGTGACCCTGGATGCCTTGCT
GGATGAACGTAACGTCACGCATACGGCGGAGCGGCTCGGGCTGACGCAGCCCGCCGTATCGGCCCAACTGGCGCGGCTGC
GGCGCATCTTCGACGATCCATTGCTGATCCCGGCCGATACGGGGCGGGGAATGATCGCAAGCGCGCGGGCCCTGGCATTG
CTGGAGCCGCTGCACGTCGCGCTCAAGGACCTGGAGTCCGTTGTGCATCGGCGGCCCGAGTTCGATCCGTTCGTCGACAC
GCGCCAGTTCGTGATCGCCGCGAGCGATAACGCCACGTCGACGCTTGGCATGTCCTTGTTGGAGCGGCTATCGATTGTCG
CGGGGACCGGGGTGCGCGTGGCGTTCGTGCATGGACGGCAGGCCGAGATCGCCGCCCAGCTCGAATCGGGTGAAGTCGAT
CTGCTGATCGGGTCCGAGCGCATGGTTCCACCAACCATGCGGGCGCGCAAACTTCTCGATGAGACCTTCGTGATGGCGCA
GCGGAAATCCCATCCTCGGGGAGCGCGCCGGCTGACGCTCGATATGTACTGCAAATTGCGCCACGTGCTGGTTTCCACGA
GTGGTGGCAGCTTCTTCGGCTTCGTTGACGAGCAGCTTCAGTTGCTGGGTCGATCGCGTGATGTCGCGGTATCGGTTCAG
GCATTCACGGTGGTCCCCGATTTGCTGCGCCGTAGTGACTACGTCTGCACGATGCCGGCTCGGCTGGCGGCACGCTATGC
CGATTGGCTGGATGCCTTCGCGCTGCCGTTCGATGTGCCGGGATTCTCGCTCAGCGCGGCATGGCACCCGCGCAACCACG
CGGACCCCGCGATTGCCTGGCTGCGGAGCACACTGGCCGAGGTGGCCGGCCAGTTGCGTGAGGGCTGA

Upstream 100 bases:

>100_bases
TGGTCGAGCATCCAGGCTTTCATATCGGGGCTCCTTGATTGGGGTGTCCGCCGGTTGGCTGGCTTGAACTGTAGGGGCTC
GCGACCTATCTTTGAAATCG

Downstream 100 bases:

>100_bases
GCACGGCGGCAACTCAGGTGCCGGTCCCGCTCGCGAGCGCAGTAGAATGCAATATGGCAGAGACGCACCCCGAAGCGTCC
ATCTAGCCCAGGGGCATCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTDIRGISVVDFKGVDLNLLVTLDALLDERNVTHTAERLGLTQPAVSAQLARLRRIFDDPLLIPADTGRGMIASARALAL
LEPLHVALKDLESVVHRRPEFDPFVDTRQFVIAASDNATSTLGMSLLERLSIVAGTGVRVAFVHGRQAEIAAQLESGEVD
LLIGSERMVPPTMRARKLLDETFVMAQRKSHPRGARRLTLDMYCKLRHVLVSTSGGSFFGFVDEQLQLLGRSRDVAVSVQ
AFTVVPDLLRRSDYVCTMPARLAARYADWLDAFALPFDVPGFSLSAAWHPRNHADPAIAWLRSTLAEVAGQLREG

Sequences:

>Translated_315_residues
MTDIRGISVVDFKGVDLNLLVTLDALLDERNVTHTAERLGLTQPAVSAQLARLRRIFDDPLLIPADTGRGMIASARALAL
LEPLHVALKDLESVVHRRPEFDPFVDTRQFVIAASDNATSTLGMSLLERLSIVAGTGVRVAFVHGRQAEIAAQLESGEVD
LLIGSERMVPPTMRARKLLDETFVMAQRKSHPRGARRLTLDMYCKLRHVLVSTSGGSFFGFVDEQLQLLGRSRDVAVSVQ
AFTVVPDLLRRSDYVCTMPARLAARYADWLDAFALPFDVPGFSLSAAWHPRNHADPAIAWLRSTLAEVAGQLREG
>Mature_314_residues
TDIRGISVVDFKGVDLNLLVTLDALLDERNVTHTAERLGLTQPAVSAQLARLRRIFDDPLLIPADTGRGMIASARALALL
EPLHVALKDLESVVHRRPEFDPFVDTRQFVIAASDNATSTLGMSLLERLSIVAGTGVRVAFVHGRQAEIAAQLESGEVDL
LIGSERMVPPTMRARKLLDETFVMAQRKSHPRGARRLTLDMYCKLRHVLVSTSGGSFFGFVDEQLQLLGRSRDVAVSVQA
FTVVPDLLRRSDYVCTMPARLAARYADWLDAFALPFDVPGFSLSAAWHPRNHADPAIAWLRSTLAEVAGQLREG

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=306, Percent_Identity=26.1437908496732, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790147, Length=325, Percent_Identity=27.3846153846154, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34658; Mature: 34527

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIRGISVVDFKGVDLNLLVTLDALLDERNVTHTAERLGLTQPAVSAQLARLRRIFDDP
CCCCCCEEEEEECCCCEEEEEEEHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC
LLIPADTGRGMIASARALALLEPLHVALKDLESVVHRRPEFDPFVDTRQFVIAASDNATS
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHH
TLGMSLLERLSIVAGTGVRVAFVHGRQAEIAAQLESGEVDLLIGSERMVPPTMRARKLLD
HHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEECCCCEEEEECCCCCCCHHHHHHHHHH
ETFVMAQRKSHPRGARRLTLDMYCKLRHVLVSTSGGSFFGFVDEQLQLLGRSRDVAVSVQ
HHHHHHHHCCCCCCHHEEHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHCCCCCEEEEEH
AFTVVPDLLRRSDYVCTMPARLAARYADWLDAFALPFDVPGFSLSAAWHPRNHADPAIAW
HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHH
LRSTLAEVAGQLREG
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDIRGISVVDFKGVDLNLLVTLDALLDERNVTHTAERLGLTQPAVSAQLARLRRIFDDP
CCCCCEEEEEECCCCEEEEEEEHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC
LLIPADTGRGMIASARALALLEPLHVALKDLESVVHRRPEFDPFVDTRQFVIAASDNATS
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHH
TLGMSLLERLSIVAGTGVRVAFVHGRQAEIAAQLESGEVDLLIGSERMVPPTMRARKLLD
HHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEECCCCEEEEECCCCCCCHHHHHHHHHH
ETFVMAQRKSHPRGARRLTLDMYCKLRHVLVSTSGGSFFGFVDEQLQLLGRSRDVAVSVQ
HHHHHHHHCCCCCCHHEEHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHCCCCCEEEEEH
AFTVVPDLLRRSDYVCTMPARLAARYADWLDAFALPFDVPGFSLSAAWHPRNHADPAIAW
HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHH
LRSTLAEVAGQLREG
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]