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The map label for this gene is ydfH [C]

Identifier: 94314019

GI number: 94314019

Start: 1792012

End: 1792692

Strand: Reverse

Name: ydfH [C]

Synonym: Rmet_5100

Alternate gene names: 94314019

Gene position: 1792692-1792012 (Counterclockwise)

Preceding gene: 94314020

Following gene: 94314018

Centisome position: 69.48

GC content: 62.7

Gene sequence:

>681_bases
ATGAACGGAAGATCCACGTCTGCGCTAGGCGCGGCGACACGCGCCGAAGCGGCAACGGAAGAACTCAGGCGGCGAATCCT
GGAAGGCGAGCTAGTGGAGGGCTTTCAGCTCAAGCAGGATCTTCTCGCGGAAGAATTCGGCATCAGCCGCATCCCGGTGC
GGGAAGCACTGGTCCAGCTAGAGAACGAAGGGCTGGTGAAGATCGTCCCCCACAAGGGGGCGATTGTTGCGGAGCTGTCG
ACGAAGGACATCGAAGAGCTGTTCTCGTTGCGCGCGCTGCTCGAATCCCATCTGCTCCGACATTCGATTCCCCGCCTCAC
AAAGGATGACTTCGACCGACTCGATGAAATCCTGAAGCGCTACGCCATCGAGCTCGCCGAGGGGCATTCGCACCGGTGGG
GCGAACTCAACACCGAGCTGCACGACATCCTGCTCGGGCGTGCCAACCGGCCCAGGTCCCTGGACCTGGTGCAGTCGCTA
TTGCGGCAGACCGATCGCTACACACGGGTGCAGCTCTCCATCAGCGATGCCGCCGTGCAGCGCGCCAAGGCGGAACACGA
GGAACTCGTCCGCCTTTGCCGGCTGGGCGAATCGAGGGAGGCGTGCGCGCTGCTCAAGCGGCATATCGAACATGCCGGCG
AGGAGTTGATTCTGTTTCTGCGGGAGCGCCGGAGGCCGTAA

Upstream 100 bases:

>100_bases
AACTCAGGTGCCGGTCCCGCTCGCGAGCGCAGTAGAATGCAATATGGCAGAGACGCACCCCGAAGCGTCCATCTAGCCCA
GGGGCATCCACGAGACAGAT

Downstream 100 bases:

>100_bases
GGCGCGATGGCCCTGCTGTAGAATGTAGAAAATATGCAAAACGGCGCCAGGTGGCGCCGTTGTCAACTTCCAATGGTCAC
CAATAAACCTGGTCTTCGGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORFX [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNGRSTSALGAATRAEAATEELRRRILEGELVEGFQLKQDLLAEEFGISRIPVREALVQLENEGLVKIVPHKGAIVAELS
TKDIEELFSLRALLESHLLRHSIPRLTKDDFDRLDEILKRYAIELAEGHSHRWGELNTELHDILLGRANRPRSLDLVQSL
LRQTDRYTRVQLSISDAAVQRAKAEHEELVRLCRLGESREACALLKRHIEHAGEELILFLRERRRP

Sequences:

>Translated_226_residues
MNGRSTSALGAATRAEAATEELRRRILEGELVEGFQLKQDLLAEEFGISRIPVREALVQLENEGLVKIVPHKGAIVAELS
TKDIEELFSLRALLESHLLRHSIPRLTKDDFDRLDEILKRYAIELAEGHSHRWGELNTELHDILLGRANRPRSLDLVQSL
LRQTDRYTRVQLSISDAAVQRAKAEHEELVRLCRLGESREACALLKRHIEHAGEELILFLRERRRP
>Mature_226_residues
MNGRSTSALGAATRAEAATEELRRRILEGELVEGFQLKQDLLAEEFGISRIPVREALVQLENEGLVKIVPHKGAIVAELS
TKDIEELFSLRALLESHLLRHSIPRLTKDDFDRLDEILKRYAIELAEGHSHRWGELNTELHDILLGRANRPRSLDLVQSL
LRQTDRYTRVQLSISDAAVQRAKAEHEELVRLCRLGESREACALLKRHIEHAGEELILFLRERRRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25852; Mature: 25852

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGRSTSALGAATRAEAATEELRRRILEGELVEGFQLKQDLLAEEFGISRIPVREALVQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ENEGLVKIVPHKGAIVAELSTKDIEELFSLRALLESHLLRHSIPRLTKDDFDRLDEILKR
CCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YAIELAEGHSHRWGELNTELHDILLGRANRPRSLDLVQSLLRQTDRYTRVQLSISDAAVQ
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHEEEEEHHHHHHH
RAKAEHEELVRLCRLGESREACALLKRHIEHAGEELILFLRERRRP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNGRSTSALGAATRAEAATEELRRRILEGELVEGFQLKQDLLAEEFGISRIPVREALVQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ENEGLVKIVPHKGAIVAELSTKDIEELFSLRALLESHLLRHSIPRLTKDDFDRLDEILKR
CCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YAIELAEGHSHRWGELNTELHDILLGRANRPRSLDLVQSLLRQTDRYTRVQLSISDAAVQ
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHEEEEEHHHHHHH
RAKAEHEELVRLCRLGESREACALLKRHIEHAGEELILFLRERRRP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8672817 [H]