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The map label for this gene is ycjC [C]

Identifier: 94314004

GI number: 94314004

Start: 1773850

End: 1774605

Strand: Reverse

Name: ycjC [C]

Synonym: Rmet_5085

Alternate gene names: 94314004

Gene position: 1774605-1773850 (Counterclockwise)

Preceding gene: 94314014

Following gene: 94313996

Centisome position: 68.78

GC content: 66.27

Gene sequence:

>756_bases
TTGAAAGAGACTAATGCCTCGGCGCACGTGGACCCGTCGCGCACGCTGGACCGGGAGACCTTCGGCAAGCGCCTGCGCGG
CGCGCGCAAGGCGCTCGGCTGGACGCTGGCTCACCTTGCCGAGCTGTCCGGCGTATCCATCACCACCATCTCGCGCGCGG
AGCGTGGCCAGCTTGCGCTCGGCTACGACAACTTCGCGGCCATCGGCAAAGCGCTGCAGATGGACATGGGCGAGATGTTC
GCCGGAGCGGGGGAGACTGCGGCGCCATTCCAGGGGCCCATCGTCACGCGCGCCAATCAGGGCGTGGTCTATACCGGCCA
GTCGATCGCCTATGAGTTTCTCTGTACCGAGGCGGCCGGCAAACAGATGAGCCCGACGGTGGCCACCGTCCACGCGCGGC
ACATCACGGGCCCGGAGGTCTTTGCCAGCCACCCCGGCGAGGAATTCATCTATGTGCTGAGCGGCGAAGTCGAGGTGCAC
TTCGCGAATGGCGAGTTCGTGCGACTGGCACGCGGGGATTCCTTGTACTTCGATGCCCGGCTGGGACACGCCTATATCAG
CGTCAGCCGGCAACTGGCACGTACCATTGGCGTGACCACCAGCGAGAGCCAGCAGATGCGCTCCGCTCAGGCGCTGCCGG
CAGCGGTGTCAAGCAAGGTCAAGGAGCGGAGAGCGGTGGCCGCGCCGGGCGCAAAGGCCGTCAGCGGCAAACGTGCAGGC
ACCGTCGCGAAACGGGCGGTCAAGATCAAGCGTTGA

Upstream 100 bases:

>100_bases
GGATACGCAAATTATCGGATAAATTGCGGATGCCAAGGGCATACCCCTACGTGGGGGATGTGCCGGGCTCAACAACACGT
CATCACGAAAGGATCCTGGC

Downstream 100 bases:

>100_bases
TCCATTGATGCGGCTGCCGCGCGATCACGCGGCCTCGGCCTGTCAACCCGGAATCGTCACGCCGCACTCCTGCGCCACCG
CATGAAGCTTTTCCAGATCG

Product: XRE family transcriptional regulator with cupin sensor domain

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cupin 2 Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator HTH_3 Family; Helix-Turn-Helix Family; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Barrel Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator Xre Family; XRE Family-Like Protein; HTH_3family Transcriptional Regulator; Phosphotransbutyrylase

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKETNASAHVDPSRTLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLALGYDNFAAIGKALQMDMGEMF
AGAGETAAPFQGPIVTRANQGVVYTGQSIAYEFLCTEAAGKQMSPTVATVHARHITGPEVFASHPGEEFIYVLSGEVEVH
FANGEFVRLARGDSLYFDARLGHAYISVSRQLARTIGVTTSESQQMRSAQALPAAVSSKVKERRAVAAPGAKAVSGKRAG
TVAKRAVKIKR

Sequences:

>Translated_251_residues
MKETNASAHVDPSRTLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLALGYDNFAAIGKALQMDMGEMF
AGAGETAAPFQGPIVTRANQGVVYTGQSIAYEFLCTEAAGKQMSPTVATVHARHITGPEVFASHPGEEFIYVLSGEVEVH
FANGEFVRLARGDSLYFDARLGHAYISVSRQLARTIGVTTSESQQMRSAQALPAAVSSKVKERRAVAAPGAKAVSGKRAG
TVAKRAVKIKR
>Mature_251_residues
MKETNASAHVDPSRTLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLALGYDNFAAIGKALQMDMGEMF
AGAGETAAPFQGPIVTRANQGVVYTGQSIAYEFLCTEAAGKQMSPTVATVHARHITGPEVFASHPGEEFIYVLSGEVEVH
FANGEFVRLARGDSLYFDARLGHAYISVSRQLARTIGVTTSESQQMRSAQALPAAVSSKVKERRAVAAPGAKAVSGKRAG
TVAKRAVKIKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26791; Mature: 26791

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKETNASAHVDPSRTLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLAL
CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEE
GYDNFAAIGKALQMDMGEMFAGAGETAAPFQGPIVTRANQGVVYTGQSIAYEFLCTEAAG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECHHHEEEEEEHHHCC
KQMSPTVATVHARHITGPEVFASHPGEEFIYVLSGEVEVHFANGEFVRLARGDSLYFDAR
CCCCCCEEEEEEECCCCCHHHHCCCCCEEEEEEECEEEEEECCCCEEEEECCCEEEEEEE
LGHAYISVSRQLARTIGVTTSESQQMRSAQALPAAVSSKVKERRAVAAPGAKAVSGKRAG
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHH
TVAKRAVKIKR
HHHHHHHCCCC
>Mature Secondary Structure
MKETNASAHVDPSRTLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLAL
CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEE
GYDNFAAIGKALQMDMGEMFAGAGETAAPFQGPIVTRANQGVVYTGQSIAYEFLCTEAAG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECHHHEEEEEEHHHCC
KQMSPTVATVHARHITGPEVFASHPGEEFIYVLSGEVEVHFANGEFVRLARGDSLYFDAR
CCCCCCEEEEEEECCCCCHHHHCCCCCEEEEEEECEEEEEECCCCEEEEECCCEEEEEEE
LGHAYISVSRQLARTIGVTTSESQQMRSAQALPAAVSSKVKERRAVAAPGAKAVSGKRAG
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHH
TVAKRAVKIKR
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA