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The map label for this gene is hpcD

Identifier: 94313655

GI number: 94313655

Start: 1376695

End: 1377129

Strand: Direct

Name: hpcD

Synonym: Rmet_4733

Alternate gene names: NA

Gene position: 1376695-1377129 (Clockwise)

Preceding gene: 94313654

Following gene: 94313658

Centisome position: 53.36

GC content: 63.22

Gene sequence:

>435_bases
TTGCGGGCACGCCGCACCGGAATGCCGTACGATGCGGGTTTCCCGCTATCAACCGGACCCGGTTCCATGCCCCATCTCGT
CATCGAACTCACGGAAAACACCCGCCTGACCTGCTCTCAAGAAGAGCTGCTCGACGAGGCGAACGCCGCGCTGCTGTCCA
GCGGCCAATTCCAGGAACCCGATATCAAGTCGCGCTGCGTGACGCTCTCCACCTATCGCCAGGGAACGGAGAACGTGGAC
CGCGCGTTCGTCCACGCCACGCTGCAGATCCTGGACGGCCGTGAGCAGGCTGTGCGCAAGGAACTCGGCCAGCTGGTGTG
CAATGCGATCTCGGAGATGGTCCGCCCCGGCGCGTCGGCGCAAAGCGTTCAGGTGTCTGTGAACGTCGTGGAAATGGAGC
GCGCGACGTACTCCAAGCAGATCATTGGCGGCTAA

Upstream 100 bases:

>100_bases
GAGAAAGTGCGTCCGCTGCTGCGTGACCATATCCGCAAGATCGAAGCCGCGTTCGGTGTCACACGGTAACGGAGCGCAAC
ACTGACGGGATGGGAAACGG

Downstream 100 bases:

>100_bases
GCCTGGCGATCTTCCGCCTCTCCCCCACCTGCGGGAGAGAGGCGACACCCCTCAACAAACCACCACTCAGGTCACCGGCG
CCGGATTGAACAGCGCCAGC

Product: 5-carboxymethyl-2-hydroxymuconate isomerase

Products: 5-carboxy-2-oxohept-3-enedioate

Alternate protein names: Isomerase 5-Carboxymethyl-2-Hydroxymuconate Isomerase

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MRARRTGMPYDAGFPLSTGPGSMPHLVIELTENTRLTCSQEELLDEANAALLSSGQFQEPDIKSRCVTLSTYRQGTENVD
RAFVHATLQILDGREQAVRKELGQLVCNAISEMVRPGASAQSVQVSVNVVEMERATYSKQIIGG

Sequences:

>Translated_144_residues
MRARRTGMPYDAGFPLSTGPGSMPHLVIELTENTRLTCSQEELLDEANAALLSSGQFQEPDIKSRCVTLSTYRQGTENVD
RAFVHATLQILDGREQAVRKELGQLVCNAISEMVRPGASAQSVQVSVNVVEMERATYSKQIIGG
>Mature_144_residues
MRARRTGMPYDAGFPLSTGPGSMPHLVIELTENTRLTCSQEELLDEANAALLSSGQFQEPDIKSRCVTLSTYRQGTENVD
RAFVHATLQILDGREQAVRKELGQLVCNAISEMVRPGASAQSVQVSVNVVEMERATYSKQIIGG

Specific function: Unknown

COG id: COG3232

COG function: function code E; 5-carboxymethyl-2-hydroxymuconate isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 5.3.3.10

Molecular weight: Translated: 15727; Mature: 15727

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARRTGMPYDAGFPLSTGPGSMPHLVIELTENTRLTCSQEELLDEANAALLSSGQFQEP
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHCCCCCCCC
DIKSRCVTLSTYRQGTENVDRAFVHATLQILDGREQAVRKELGQLVCNAISEMVRPGASA
CCHHHEEEHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
QSVQVSVNVVEMERATYSKQIIGG
CEEEEEEEEEEHHHHHHHHHHCCC
>Mature Secondary Structure
MRARRTGMPYDAGFPLSTGPGSMPHLVIELTENTRLTCSQEELLDEANAALLSSGQFQEP
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHCCCCCCCC
DIKSRCVTLSTYRQGTENVDRAFVHATLQILDGREQAVRKELGQLVCNAISEMVRPGASA
CCHHHEEEHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
QSVQVSVNVVEMERATYSKQIIGG
CEEEEEEEEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 5-carboxymethyl-2-hydroxymuconate

Specific reaction: 5-carboxymethyl-2-hydroxymuconate = 5-carboxy-2-oxohept-3-enedioate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA