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The map label for this gene is ykgD [C]

Identifier: 94313653

GI number: 94313653

Start: 1374696

End: 1375565

Strand: Direct

Name: ykgD [C]

Synonym: Rmet_4731

Alternate gene names: 94313653

Gene position: 1374696-1375565 (Clockwise)

Preceding gene: 94313651

Following gene: 94313654

Centisome position: 53.28

GC content: 66.21

Gene sequence:

>870_bases
ATGTCCCACCCGATCGAATCCACTCCTGACCGCCTCTCCGGCTTGCTGGAGCGCTTCCGCGTTCGCGCCCACCTGTTCCA
TACCGGGGCGCTCTGCGGGATCAGCCGGTTCGATGTGAAGGAACGCGGATTCCTGCACGTGCTGCGCGAAGGCCATCTGA
CGCTCTCGCACTCGGCCCGTGGCCTGCCTCGGCGCATGGAAATCCGCGAACCGTCCCTGCTGTTCTATCCGCGGCACGTC
GTCCACACCTTCCACAATCCGCCGATCGAAGGCTCGCAGTTCACCTGCGCCACGCTCGAGTTCGCCGGAGGTGCAATGAA
CCCGGTTGCGAGGGCCCTGCCCCCGCTGATCGTGTTGCCGCTGGCGCGGGTCGAGGGGCTGGATGCCGCGCTATCGCTGC
TGTTCGCCGAGACCGGGCGTGTCCGCTGCGGCCAGCGGCTGCTGGCAGACCGCTTGTTCGAGGTCGTGCTGATCCAGCTA
CTGCGCTGGATGCTCGATCATCCGGCCGATGCAGGCATCCAGGCGGGCCTGATTACCGGGCTTTCCGATCCGCGACTGGC
CCGCGCACTGGTGGCGATGCACGAAGCCCCTGGCGAGACCTGGAACCTGGACCGCATGGCGTCCTGCGCCGGCATGTCGC
GCAGCGCATTCGCCTCCGCCTTCCGCGAAATCGTGGGACAAACGCCAGCCGACTACCTGGCCGGCTGGCGTATCAGCCTT
GCACAGGCCCGGCTGCGTGATGGCGTACCGATCAAGCTGCTGGCCAACGAACTTGGGTATGCCAACCCCTCTGCGCTGTC
GCGTGTTTTCGCGGCCAAAGTTGGCAAATCGCCACGGGAATGGCTGCAGACGCAAGCCTCCGAGCACTAG

Upstream 100 bases:

>100_bases
GAACCGGACGGGCCGTGCCGTCCATGGGCTCCACTATGCCGCCGGGCGCAACACGATCGGATACCATACGTCCACGAAAC
ATACCAATTCATCCATCAAG

Downstream 100 bases:

>100_bases
ATTCAGCCGTTGAATTCTGCAATGCAGAATTATGATTCCGCGCTGCGGTTGACAATTGCCGAGTATCGGTGGGACGATTC
GACTCATCGAATACCGGTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MSHPIESTPDRLSGLLERFRVRAHLFHTGALCGISRFDVKERGFLHVLREGHLTLSHSARGLPRRMEIREPSLLFYPRHV
VHTFHNPPIEGSQFTCATLEFAGGAMNPVARALPPLIVLPLARVEGLDAALSLLFAETGRVRCGQRLLADRLFEVVLIQL
LRWMLDHPADAGIQAGLITGLSDPRLARALVAMHEAPGETWNLDRMASCAGMSRSAFASAFREIVGQTPADYLAGWRISL
AQARLRDGVPIKLLANELGYANPSALSRVFAAKVGKSPREWLQTQASEH

Sequences:

>Translated_289_residues
MSHPIESTPDRLSGLLERFRVRAHLFHTGALCGISRFDVKERGFLHVLREGHLTLSHSARGLPRRMEIREPSLLFYPRHV
VHTFHNPPIEGSQFTCATLEFAGGAMNPVARALPPLIVLPLARVEGLDAALSLLFAETGRVRCGQRLLADRLFEVVLIQL
LRWMLDHPADAGIQAGLITGLSDPRLARALVAMHEAPGETWNLDRMASCAGMSRSAFASAFREIVGQTPADYLAGWRISL
AQARLRDGVPIKLLANELGYANPSALSRVFAAKVGKSPREWLQTQASEH
>Mature_288_residues
SHPIESTPDRLSGLLERFRVRAHLFHTGALCGISRFDVKERGFLHVLREGHLTLSHSARGLPRRMEIREPSLLFYPRHVV
HTFHNPPIEGSQFTCATLEFAGGAMNPVARALPPLIVLPLARVEGLDAALSLLFAETGRVRCGQRLLADRLFEVVLIQLL
RWMLDHPADAGIQAGLITGLSDPRLARALVAMHEAPGETWNLDRMASCAGMSRSAFASAFREIVGQTPADYLAGWRISLA
QARLRDGVPIKLLANELGYANPSALSRVFAAKVGKSPREWLQTQASEH

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=246, Percent_Identity=25.609756097561, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31854; Mature: 31723

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHPIESTPDRLSGLLERFRVRAHLFHTGALCGISRFDVKERGFLHVLREGHLTLSHSAR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCEEEECCCC
GLPRRMEIREPSLLFYPRHVVHTFHNPPIEGSQFTCATLEFAGGAMNPVARALPPLIVLP
CCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEEEEEHHHCCCCCCHHHHHCCHHHHHH
LARVEGLDAALSLLFAETGRVRCGQRLLADRLFEVVLIQLLRWMLDHPADAGIQAGLITG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
LSDPRLARALVAMHEAPGETWNLDRMASCAGMSRSAFASAFREIVGQTPADYLAGWRISL
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCHHHH
AQARLRDGVPIKLLANELGYANPSALSRVFAAKVGKSPREWLQTQASEH
HHHHHHCCCCCEEHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SHPIESTPDRLSGLLERFRVRAHLFHTGALCGISRFDVKERGFLHVLREGHLTLSHSAR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCEEEECCCC
GLPRRMEIREPSLLFYPRHVVHTFHNPPIEGSQFTCATLEFAGGAMNPVARALPPLIVLP
CCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEEEEEHHHCCCCCCHHHHHCCHHHHHH
LARVEGLDAALSLLFAETGRVRCGQRLLADRLFEVVLIQLLRWMLDHPADAGIQAGLITG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
LSDPRLARALVAMHEAPGETWNLDRMASCAGMSRSAFASAFREIVGQTPADYLAGWRISL
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCHHHH
AQARLRDGVPIKLLANELGYANPSALSRVFAAKVGKSPREWLQTQASEH
HHHHHHCCCCCEEHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]