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The map label for this gene is ytcJ [H]

Identifier: 94313575

GI number: 94313575

Start: 1284792

End: 1286474

Strand: Direct

Name: ytcJ [H]

Synonym: Rmet_4653

Alternate gene names: 94313575

Gene position: 1284792-1286474 (Clockwise)

Preceding gene: 94313574

Following gene: 94313577

Centisome position: 49.8

GC content: 65.0

Gene sequence:

>1683_bases
TTGAAGAAAGTCATCCGTACCAGTCTGGTAGCGTTGGCAGCCGCCATGACCATGATGCACGCCCACGCAGCCCCAACGCT
GGTGGAGTCGGTGCAGGGCTACACGCTGCAGCACGATCAGATCGTGCAGTTCAGCGGTCTCGTGTTCGACCAGGGCAAGG
TCGTGGCCACCGGTGACGCCGCCGCCCTGCGCGCGAAATACCCCGATGCCAAGCGTATCGACGGTCAGGGCAAGACGTTG
TTGCCGGGCCTGATCGACGCCCACGGCCACGTGTTCCGCCTGGGCTTCAAGACGACCGAGATTTCGCTCTCCGGCACGCG
CGACCTGCAAGAAGCGCAAGGCCTGATCCGTGCCTACGGTCAGAAGAACCCCCAACGCCAGTGGCTGCTCGGCTACGGCT
GGAATCAGGTGAACTGGAAGCTGGGCCGCTTCCCGACCGCCGCCGAGCTCGATGCCGCGGTGTCGGACCGCCCGGTGCGA
CTGGTTCGGGTGGATGGCCATGCCGCGTGGCTGAACACCAAGGCCATGCAGGCGGCCGGCATCACACGTGACACCAAGGA
CCCGGCCGGTGGCCGTATCGAGCGCGACGCGGAGGGCAACCCGACCGGCGTGCTGGTCGACAAGGCCATGGCGCTGGTCA
ACGATGTGATTCCGCCCTACACCGACAACGATCGCCGTGCCGCGCTGGCCGCCGCCGTCGCGCATATGAACGCGCTGGGC
CTGACCGCCGTGGGCGATGCCGGCGTGACCGTGGCCGACGACCGCATCTATCGCGAGTTCGCCGACCAGGGCAAGCTGAA
CACCCGCATCTACGGGATGATTCGCGATACGGGCGACGACTTCAAGGCCCTTTCCGCCAAGGGGCCGCTGATCGGCTACG
GTAATGACCGCTATTACCTGCGTGCCGTGAAGCTCTACGGCGATGGCGCGCTGGGCAGCCGTGGCGCCGCGCTGATGGAG
CCCTACACCGACGACCACGCCCATAGCGGCCTGCTGTTCATGAGCGATGCCGCGATGCAGACCGCCGTGAAGACCGCCCT
CAAGGCTGGTTACCAGGTCAATGTGCACGCCATCGGCGACAAGACCAATCATCAGGTGCTCGACGCCATGGAAGTGGCCT
ACAAGGAAGTGGGTGGCCGCGACCTGCGCAACCGGATCGAACACGCGCAGGTGGTCTCGCTGCCTGATATTCCGCGCTTC
AAGAAGCTGGACCTGATCGCGTCGATGCAGCCGACGCACGCCACCAGCGACATGAACATGGCGGAAGACCGTATCGGCAA
GGAACGCATCAAGGGCGCCTATGCCTGGCAAACCTTCCTGAAGCAAGGCACCGTGATTGCCGGCGGCTCGGATTTCCCGG
TGGAATCGGCCAACCCGTTCTACGGCCTGCACGCGGCGGTGACGCGTACCGACCATGAAGGCCGACCGATCCACGGCTGG
CACCCCGAGGAAGCAATGACCCTGCCGCAGGCATTCCGCGCGTTCACGCTGGACGCCGCCTACGCCGAGCATCAGGAAAA
GACGCTGGGTTCGCTGGAGACCGGCAAGTGGGCCGATTTCATCGTGGTGGACCGCGACCTGTTCAAGGTAGCCCCGGCCG
ATATCTGGAAGATCCAGGTACTGGAAACGTGGGTAGCCGGCGAGCGCGTGTATGCGAAGGGTGAGCAGTCGGCACAGCGC
TGA

Upstream 100 bases:

>100_bases
GTCTGCAATGTCCGGTCAAGTACATACAAAGAAGGTGGGCCGGTCTCACCATCGCCGGCCAGAACACTAAAAAACAAAGC
ACAACGAGAAGGAGAGATTC

Downstream 100 bases:

>100_bases
ACCGAGTCATGATTGCGCCGTGATGGCGTGATAGCCGTTGCATGGGAAAAAGCCCGCTCTCTTCACGAGAGCGGGCTTTT
TTCTTTGCCTCTTAAACGTC

Product: putative metal-dependent amidohydrolase with the TIM-barrel fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MKKVIRTSLVALAAAMTMMHAHAAPTLVESVQGYTLQHDQIVQFSGLVFDQGKVVATGDAAALRAKYPDAKRIDGQGKTL
LPGLIDAHGHVFRLGFKTTEISLSGTRDLQEAQGLIRAYGQKNPQRQWLLGYGWNQVNWKLGRFPTAAELDAAVSDRPVR
LVRVDGHAAWLNTKAMQAAGITRDTKDPAGGRIERDAEGNPTGVLVDKAMALVNDVIPPYTDNDRRAALAAAVAHMNALG
LTAVGDAGVTVADDRIYREFADQGKLNTRIYGMIRDTGDDFKALSAKGPLIGYGNDRYYLRAVKLYGDGALGSRGAALME
PYTDDHAHSGLLFMSDAAMQTAVKTALKAGYQVNVHAIGDKTNHQVLDAMEVAYKEVGGRDLRNRIEHAQVVSLPDIPRF
KKLDLIASMQPTHATSDMNMAEDRIGKERIKGAYAWQTFLKQGTVIAGGSDFPVESANPFYGLHAAVTRTDHEGRPIHGW
HPEEAMTLPQAFRAFTLDAAYAEHQEKTLGSLETGKWADFIVVDRDLFKVAPADIWKIQVLETWVAGERVYAKGEQSAQR

Sequences:

>Translated_560_residues
MKKVIRTSLVALAAAMTMMHAHAAPTLVESVQGYTLQHDQIVQFSGLVFDQGKVVATGDAAALRAKYPDAKRIDGQGKTL
LPGLIDAHGHVFRLGFKTTEISLSGTRDLQEAQGLIRAYGQKNPQRQWLLGYGWNQVNWKLGRFPTAAELDAAVSDRPVR
LVRVDGHAAWLNTKAMQAAGITRDTKDPAGGRIERDAEGNPTGVLVDKAMALVNDVIPPYTDNDRRAALAAAVAHMNALG
LTAVGDAGVTVADDRIYREFADQGKLNTRIYGMIRDTGDDFKALSAKGPLIGYGNDRYYLRAVKLYGDGALGSRGAALME
PYTDDHAHSGLLFMSDAAMQTAVKTALKAGYQVNVHAIGDKTNHQVLDAMEVAYKEVGGRDLRNRIEHAQVVSLPDIPRF
KKLDLIASMQPTHATSDMNMAEDRIGKERIKGAYAWQTFLKQGTVIAGGSDFPVESANPFYGLHAAVTRTDHEGRPIHGW
HPEEAMTLPQAFRAFTLDAAYAEHQEKTLGSLETGKWADFIVVDRDLFKVAPADIWKIQVLETWVAGERVYAKGEQSAQR
>Mature_560_residues
MKKVIRTSLVALAAAMTMMHAHAAPTLVESVQGYTLQHDQIVQFSGLVFDQGKVVATGDAAALRAKYPDAKRIDGQGKTL
LPGLIDAHGHVFRLGFKTTEISLSGTRDLQEAQGLIRAYGQKNPQRQWLLGYGWNQVNWKLGRFPTAAELDAAVSDRPVR
LVRVDGHAAWLNTKAMQAAGITRDTKDPAGGRIERDAEGNPTGVLVDKAMALVNDVIPPYTDNDRRAALAAAVAHMNALG
LTAVGDAGVTVADDRIYREFADQGKLNTRIYGMIRDTGDDFKALSAKGPLIGYGNDRYYLRAVKLYGDGALGSRGAALME
PYTDDHAHSGLLFMSDAAMQTAVKTALKAGYQVNVHAIGDKTNHQVLDAMEVAYKEVGGRDLRNRIEHAQVVSLPDIPRF
KKLDLIASMQPTHATSDMNMAEDRIGKERIKGAYAWQTFLKQGTVIAGGSDFPVESANPFYGLHAAVTRTDHEGRPIHGW
HPEEAMTLPQAFRAFTLDAAYAEHQEKTLGSLETGKWADFIVVDRDLFKVAPADIWKIQVLETWVAGERVYAKGEQSAQR

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 61167; Mature: 61167

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVIRTSLVALAAAMTMMHAHAAPTLVESVQGYTLQHDQIVQFSGLVFDQGKVVATGDA
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEECCCCEEEECCEEEECCEEEEECCH
AALRAKYPDAKRIDGQGKTLLPGLIDAHGHVFRLGFKTTEISLSGTRDLQEAQGLIRAYG
HEEEECCCCCCCCCCCCCEECCHHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHC
QKNPQRQWLLGYGWNQVNWKLGRFPTAAELDAAVSDRPVRLVRVDGHAAWLNTKAMQAAG
CCCCCCCEEEEECCCEECEEECCCCCHHHHHHHCCCCCEEEEEECCCEEEECCHHHHHCC
ITRDTKDPAGGRIERDAEGNPTGVLVDKAMALVNDVIPPYTDNDRRAALAAAVAHMNALG
CCCCCCCCCCCCEECCCCCCCCEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
LTAVGDAGVTVADDRIYREFADQGKLNTRIYGMIRDTGDDFKALSAKGPLIGYGNDRYYL
EEEECCCCCEEECHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHCCCCCEEEECCCEEEE
RAVKLYGDGALGSRGAALMEPYTDDHAHSGLLFMSDAAMQTAVKTALKAGYQVNVHAIGD
EEEEEECCCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEEECC
KTNHQVLDAMEVAYKEVGGRDLRNRIEHAQVVSLPDIPRFKKLDLIASMQPTHATSDMNM
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCCCCCCCCCH
AEDRIGKERIKGAYAWQTFLKQGTVIAGGSDFPVESANPFYGLHAAVTRTDHEGRPIHGW
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
HPEEAMTLPQAFRAFTLDAAYAEHQEKTLGSLETGKWADFIVVDRDLFKVAPADIWKIQV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCCCCCEEEEEE
LETWVAGERVYAKGEQSAQR
EHHHHCCCEEEECCCHHCCC
>Mature Secondary Structure
MKKVIRTSLVALAAAMTMMHAHAAPTLVESVQGYTLQHDQIVQFSGLVFDQGKVVATGDA
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEECCCCEEEECCEEEECCEEEEECCH
AALRAKYPDAKRIDGQGKTLLPGLIDAHGHVFRLGFKTTEISLSGTRDLQEAQGLIRAYG
HEEEECCCCCCCCCCCCCEECCHHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHC
QKNPQRQWLLGYGWNQVNWKLGRFPTAAELDAAVSDRPVRLVRVDGHAAWLNTKAMQAAG
CCCCCCCEEEEECCCEECEEECCCCCHHHHHHHCCCCCEEEEEECCCEEEECCHHHHHCC
ITRDTKDPAGGRIERDAEGNPTGVLVDKAMALVNDVIPPYTDNDRRAALAAAVAHMNALG
CCCCCCCCCCCCEECCCCCCCCEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
LTAVGDAGVTVADDRIYREFADQGKLNTRIYGMIRDTGDDFKALSAKGPLIGYGNDRYYL
EEEECCCCCEEECHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHCCCCCEEEECCCEEEE
RAVKLYGDGALGSRGAALMEPYTDDHAHSGLLFMSDAAMQTAVKTALKAGYQVNVHAIGD
EEEEEECCCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEEECC
KTNHQVLDAMEVAYKEVGGRDLRNRIEHAQVVSLPDIPRFKKLDLIASMQPTHATSDMNM
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCCCCCCCCCH
AEDRIGKERIKGAYAWQTFLKQGTVIAGGSDFPVESANPFYGLHAAVTRTDHEGRPIHGW
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
HPEEAMTLPQAFRAFTLDAAYAEHQEKTLGSLETGKWADFIVVDRDLFKVAPADIWKIQV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCCCCCEEEEEE
LETWVAGERVYAKGEQSAQR
EHHHHCCCEEEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]