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The map label for this gene is arnA [H]

Identifier: 94313513

GI number: 94313513

Start: 1210126

End: 1211052

Strand: Direct

Name: arnA [H]

Synonym: Rmet_4591

Alternate gene names: 94313513

Gene position: 1210126-1211052 (Clockwise)

Preceding gene: 94313512

Following gene: 94313514

Centisome position: 46.9

GC content: 65.7

Gene sequence:

>927_bases
GTGCGCGCAGTAGTCTTTGCCTACCATAACGTCGGTGACCGCTGCCTGCGCGTGCTGCACGCGCGCGGTGTGGACGTGGC
GCTGGTCGTCACGCACCGCGACCGACCCGACGAGAACATCTGGTTCCGCCGCGTGGCCGACACGGCCGCTGAACTGAACC
TGTCGTTCCTCTATGGCGAGGACCCGACCGACCCGGCATTGGCCGAAGCCGTTCGCGCCGCGAAGCCCGATGTCATTTTC
TCGTTCTACTACCGGTCGATGATCCCGGCTGACCTGCTGGCCGTGGCGCCGCAGGGCGCCTTCAACATGCATGGTTCGCT
GCTGCCGAAGTATCGCGGTCGCGTGCCGGTGAACTGGGCCGTGCTGCGCGGCGAGGAAGAAACCGGCGCCACGCTGCACG
CGATGGAAGCCAAGCCCGACGCCGGCTATATCGTCGACCAGACGTCGGTGCCAATCCTGCCGGACGACACGGCCGGCGAG
GTCTTCGAGAAGGTCACCGTCGCCGCCGAGCAAACGCTGTGGCGCGCGCTGCCCGCCATGATGGCCGGCCAGACGCCCAA
GCGTCCCAATGTGCTCTCCGAGGGCAGCTATTTCTCGGGACGCAAACCCGAGGACGGCCGTATCGATTTCAGCCAACCGG
CAGCAGCGGTCTACAATTTGATCCGCGCGGTCGCGCCCCCCTATCCGGGCGCATTCACCGATATCGGCGGTCGTCGCTTC
ATCGTCGCCCAGGCACGCCGTCTGGAATCGTCGAGCGTGCCGGCGGGCCTGCAGCCTGGCCTGCATGTCGTGGATGGACG
TATCGTGGCGGTCGGCGGCGACGGCGGAGCCATCCGCGTGACGCAGTTGCTCGAAGGTCCGAACGCCGACAACGCGAGCC
CGGTATCTGTACAAGTATTCCAAAACATCATTACTGCGAAGTCCTAA

Upstream 100 bases:

>100_bases
GGATCTATCAGGAAGTGCGCGACCGCCCGCGCTACCGCATCCAGGCGGTGCTTGAGCGTGACCCCCGTGACCCGAAGACC
GACAACGCAGCGGAGGCCTC

Downstream 100 bases:

>100_bases
GAGGAAAACCGATGAAAAAGGTCCTGATTCTTGGCGTCAATGGCTTCATCGGCCACCATCTGACGCGCCGCATCCTGGAA
ACGACGCAATGGGAGGTCTA

Product: putative formyltransferase

Products: NA

Alternate protein names: UDP-4-amino-4-deoxy-L-arabinose formyltransferase; ArnAFT; UDP-L-Ara4N formyltransferase; UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; ArnADH; UDP-GlcUA decarboxylase; UDP-glucuronic acid dehydrogenase [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MRAVVFAYHNVGDRCLRVLHARGVDVALVVTHRDRPDENIWFRRVADTAAELNLSFLYGEDPTDPALAEAVRAAKPDVIF
SFYYRSMIPADLLAVAPQGAFNMHGSLLPKYRGRVPVNWAVLRGEEETGATLHAMEAKPDAGYIVDQTSVPILPDDTAGE
VFEKVTVAAEQTLWRALPAMMAGQTPKRPNVLSEGSYFSGRKPEDGRIDFSQPAAAVYNLIRAVAPPYPGAFTDIGGRRF
IVAQARRLESSSVPAGLQPGLHVVDGRIVAVGGDGGAIRVTQLLEGPNADNASPVSVQVFQNIITAKS

Sequences:

>Translated_308_residues
MRAVVFAYHNVGDRCLRVLHARGVDVALVVTHRDRPDENIWFRRVADTAAELNLSFLYGEDPTDPALAEAVRAAKPDVIF
SFYYRSMIPADLLAVAPQGAFNMHGSLLPKYRGRVPVNWAVLRGEEETGATLHAMEAKPDAGYIVDQTSVPILPDDTAGE
VFEKVTVAAEQTLWRALPAMMAGQTPKRPNVLSEGSYFSGRKPEDGRIDFSQPAAAVYNLIRAVAPPYPGAFTDIGGRRF
IVAQARRLESSSVPAGLQPGLHVVDGRIVAVGGDGGAIRVTQLLEGPNADNASPVSVQVFQNIITAKS
>Mature_308_residues
MRAVVFAYHNVGDRCLRVLHARGVDVALVVTHRDRPDENIWFRRVADTAAELNLSFLYGEDPTDPALAEAVRAAKPDVIF
SFYYRSMIPADLLAVAPQGAFNMHGSLLPKYRGRVPVNWAVLRGEEETGATLHAMEAKPDAGYIVDQTSVPILPDDTAGE
VFEKVTVAAEQTLWRALPAMMAGQTPKRPNVLSEGSYFSGRKPEDGRIDFSQPAAAVYNLIRAVAPPYPGAFTDIGGRRF
IVAQARRLESSSVPAGLQPGLHVVDGRIVAVGGDGGAIRVTQLLEGPNADNASPVSVQVFQNIITAKS

Specific function: Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabin

COG id: COG0223

COG function: function code J; Methionyl-tRNA formyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the sugar epimerase family. UDP-glucuronic acid decarboxylase subfamily [H]

Homologues:

Organism=Homo sapiens, GI238814322, Length=230, Percent_Identity=27.3913043478261, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI21614513, Length=209, Percent_Identity=24.8803827751196, Blast_Score=82, Evalue=6e-16,
Organism=Escherichia coli, GI1788589, Length=281, Percent_Identity=40.5693950177936, Blast_Score=213, Evalue=9e-57,
Organism=Escherichia coli, GI1789683, Length=257, Percent_Identity=27.6264591439689, Blast_Score=91, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24582400, Length=131, Percent_Identity=32.0610687022901, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021168
- InterPro:   IPR001509
- InterPro:   IPR005793
- InterPro:   IPR002376
- InterPro:   IPR011034
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase; PF02911 Formyl_trans_C; PF00551 Formyl_trans_N [H]

EC number: =2.1.2.13; =1.1.1.305 [H]

Molecular weight: Translated: 33256; Mature: 33256

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAVVFAYHNVGDRCLRVLHARGVDVALVVTHRDRPDENIWFRRVADTAAELNLSFLYGE
CCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECC
DPTDPALAEAVRAAKPDVIFSFYYRSMIPADLLAVAPQGAFNMHGSLLPKYRGRVPVNWA
CCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHCCCCCCEEE
VLRGEEETGATLHAMEAKPDAGYIVDQTSVPILPDDTAGEVFEKVTVAAEQTLWRALPAM
EEECCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MAGQTPKRPNVLSEGSYFSGRKPEDGRIDFSQPAAAVYNLIRAVAPPYPGAFTDIGGRRF
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE
IVAQARRLESSSVPAGLQPGLHVVDGRIVAVGGDGGAIRVTQLLEGPNADNASPVSVQVF
EEEHHHHHHCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHH
QNIITAKS
HHHHHCCC
>Mature Secondary Structure
MRAVVFAYHNVGDRCLRVLHARGVDVALVVTHRDRPDENIWFRRVADTAAELNLSFLYGE
CCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECC
DPTDPALAEAVRAAKPDVIFSFYYRSMIPADLLAVAPQGAFNMHGSLLPKYRGRVPVNWA
CCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHCCCCCCEEE
VLRGEEETGATLHAMEAKPDAGYIVDQTSVPILPDDTAGEVFEKVTVAAEQTLWRALPAM
EEECCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MAGQTPKRPNVLSEGSYFSGRKPEDGRIDFSQPAAAVYNLIRAVAPPYPGAFTDIGGRRF
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE
IVAQARRLESSSVPAGLQPGLHVVDGRIVAVGGDGGAIRVTQLLEGPNADNASPVSVQVF
EEEHHHHHHCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHH
QNIITAKS
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA