| Definition | Cupriavidus metallidurans CH34 megaplasmid, complete sequence. |
|---|---|
| Accession | NC_007974 |
| Length | 2,580,084 |
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The map label for this gene is ydfG [C]
Identifier: 94313448
GI number: 94313448
Start: 1128168
End: 1128968
Strand: Direct
Name: ydfG [C]
Synonym: Rmet_4523
Alternate gene names: 94313448
Gene position: 1128168-1128968 (Clockwise)
Preceding gene: 94313446
Following gene: 94313462
Centisome position: 43.73
GC content: 65.42
Gene sequence:
>801_bases ATGACGCAAACTCATCTCGGCACGGCCCTGGTTACCGGCGCATCCTCGGGCATCGGCGCCATCTACGCAGACCGTCTGGC ACGCCGCGGCTATGACCTGATCCTCGTCGCCCGCAATCGCGACAAGCTCGACACCCTGGCCCGGCGCATCACTGACGATA CGCAGCGCGTGGTCGAAGTCTTCCCGGCTGATCTCAACGACCGCCAATCGCTCGCACGGGTGGAGGAAAAGCTGCGGCAG GACGCCAGCATCACGCTGCTGGTCAACAACGCAGGCGTCGGCACGCACACGCCACTGCTCGACAGCGATGTCGATGCCAT GAACCGGATGATCGACCTCAACGTCACCGCGCTGACGCGCCTGACCTATGCCGCCGTGCCGGGATTCGTCGCGCGCGGCC GTGGCGCGATCATCAATATTTCGTCGATCGTCGGCATCGCGCCCGAAATCCTGAACGGGGTGTACGGCGGCAGCAAGGCG TTCGTGCTGGCATTCAGCCAGTCGCTGCATCACGAACTCGCGGCCAAGGGGCTGCGCGTGCAGGCGGTACTGCCGGGGGC GACCGCCACGGACTTCTGGGAAACCGGTGGCCTGCCGATCGAACATCTCGACAAGGCGATCGTCATGCCGGCTGAAGCGA TGGTCGATGCGGCGCTGGTAGGCTTCGATCGTGGCGAGCTGGTGACGATTCCACCGCTGCACGCGATCGAGCAATGGAAT GCGTATGAAGGCGCGCGCCAGGCGATGGCGGGCCTGCTATCGACCAACACTCCCGCGCCCCGGTACGCGACGGGACGCTG A
Upstream 100 bases:
>100_bases GTCATTTCTGCCATGGTCAAGTCGCTTTACGATGCAATGCATGGATTCAACGCATCCCGATTTTCGAATCCCCATCGCAC GACATCGCAAGGAGAACACC
Downstream 100 bases:
>100_bases GAGGCGGAAGGCAAAGGGTGGAAGGCCCGGGAATTACTGGGTCTCGCCCCGCTCCTTGGCATCTGCGCGGGCCAGCATCG CTTCGCCGAGCGTTGTGCTG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MTQTHLGTALVTGASSGIGAIYADRLARRGYDLILVARNRDKLDTLARRITDDTQRVVEVFPADLNDRQSLARVEEKLRQ DASITLLVNNAGVGTHTPLLDSDVDAMNRMIDLNVTALTRLTYAAVPGFVARGRGAIINISSIVGIAPEILNGVYGGSKA FVLAFSQSLHHELAAKGLRVQAVLPGATATDFWETGGLPIEHLDKAIVMPAEAMVDAALVGFDRGELVTIPPLHAIEQWN AYEGARQAMAGLLSTNTPAPRYATGR
Sequences:
>Translated_266_residues MTQTHLGTALVTGASSGIGAIYADRLARRGYDLILVARNRDKLDTLARRITDDTQRVVEVFPADLNDRQSLARVEEKLRQ DASITLLVNNAGVGTHTPLLDSDVDAMNRMIDLNVTALTRLTYAAVPGFVARGRGAIINISSIVGIAPEILNGVYGGSKA FVLAFSQSLHHELAAKGLRVQAVLPGATATDFWETGGLPIEHLDKAIVMPAEAMVDAALVGFDRGELVTIPPLHAIEQWN AYEGARQAMAGLLSTNTPAPRYATGR >Mature_265_residues TQTHLGTALVTGASSGIGAIYADRLARRGYDLILVARNRDKLDTLARRITDDTQRVVEVFPADLNDRQSLARVEEKLRQD ASITLLVNNAGVGTHTPLLDSDVDAMNRMIDLNVTALTRLTYAAVPGFVARGRGAIINISSIVGIAPEILNGVYGGSKAF VLAFSQSLHHELAAKGLRVQAVLPGATATDFWETGGLPIEHLDKAIVMPAEAMVDAALVGFDRGELVTIPPLHAIEQWNA YEGARQAMAGLLSTNTPAPRYATGR
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=188, Percent_Identity=35.6382978723404, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI226371731, Length=186, Percent_Identity=34.9462365591398, Blast_Score=115, Evalue=6e-26, Organism=Homo sapiens, GI4557649, Length=186, Percent_Identity=36.0215053763441, Blast_Score=111, Evalue=7e-25, Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=32.620320855615, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=31.9148936170213, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI40254992, Length=198, Percent_Identity=31.3131313131313, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=32.1052631578947, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=32.1052631578947, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=32.2751322751323, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=30.1587301587302, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI15277342, Length=212, Percent_Identity=31.6037735849057, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI7705925, Length=184, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=29.6875, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI19743808, Length=186, Percent_Identity=30.1075268817204, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI223718074, Length=202, Percent_Identity=30.6930693069307, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=31.6666666666667, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI22507405, Length=185, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=35.1648351648352, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082100, Length=190, Percent_Identity=33.6842105263158, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=33.5135135135135, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=28.3422459893048, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87082160, Length=190, Percent_Identity=28.4210526315789, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789378, Length=197, Percent_Identity=32.48730964467, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI2367175, Length=203, Percent_Identity=30.5418719211823, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787526, Length=214, Percent_Identity=31.3084112149533, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788459, Length=205, Percent_Identity=30.2439024390244, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789208, Length=191, Percent_Identity=27.7486910994764, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71994604, Length=192, Percent_Identity=36.4583333333333, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71994600, Length=193, Percent_Identity=33.6787564766839, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI212646214, Length=189, Percent_Identity=29.1005291005291, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17559552, Length=188, Percent_Identity=28.7234042553192, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17557668, Length=188, Percent_Identity=29.2553191489362, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI25152911, Length=191, Percent_Identity=30.3664921465969, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560676, Length=187, Percent_Identity=31.0160427807487, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17555706, Length=203, Percent_Identity=29.5566502463054, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI25147288, Length=188, Percent_Identity=30.3191489361702, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17562906, Length=214, Percent_Identity=29.4392523364486, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI193204405, Length=208, Percent_Identity=30.2884615384615, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=29.7029702970297, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560176, Length=190, Percent_Identity=28.4210526315789, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17538480, Length=208, Percent_Identity=29.3269230769231, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17563726, Length=215, Percent_Identity=26.9767441860465, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560220, Length=212, Percent_Identity=27.3584905660377, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562908, Length=201, Percent_Identity=28.8557213930348, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17560332, Length=193, Percent_Identity=29.5336787564767, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17560150, Length=205, Percent_Identity=28.780487804878, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17551412, Length=192, Percent_Identity=28.125, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562990, Length=209, Percent_Identity=29.1866028708134, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI115534694, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17544670, Length=193, Percent_Identity=26.4248704663212, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17531453, Length=207, Percent_Identity=27.536231884058, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=31.5508021390374, Blast_Score=95, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=35.7142857142857, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6322067, Length=194, Percent_Identity=28.3505154639175, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=35.6020942408377, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI24644339, Length=199, Percent_Identity=35.1758793969849, Blast_Score=100, Evalue=8e-22, Organism=Drosophila melanogaster, GI28571526, Length=199, Percent_Identity=36.6834170854271, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=33.8709677419355, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=33.8709677419355, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI21357041, Length=225, Percent_Identity=34.6666666666667, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=35.3846153846154, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24584752, Length=185, Percent_Identity=32.972972972973, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI24584744, Length=186, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI28574402, Length=186, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI21358495, Length=187, Percent_Identity=31.5508021390374, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI116007236, Length=214, Percent_Identity=28.0373831775701, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580925, Length=193, Percent_Identity=31.0880829015544, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24648944, Length=207, Percent_Identity=29.951690821256, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007238, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24665247, Length=204, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21355319, Length=187, Percent_Identity=26.7379679144385, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI221331216, Length=193, Percent_Identity=30.0518134715026, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24639444, Length=182, Percent_Identity=30.2197802197802, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665243, Length=204, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI221331218, Length=192, Percent_Identity=30.2083333333333, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28448; Mature: 28317
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTHLGTALVTGASSGIGAIYADRLARRGYDLILVARNRDKLDTLARRITDDTQRVVEV CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH FPADLNDRQSLARVEEKLRQDASITLLVNNAGVGTHTPLLDSDVDAMNRMIDLNVTALTR CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHH LTYAAVPGFVARGRGAIINISSIVGIAPEILNGVYGGSKAFVLAFSQSLHHELAAKGLRV HHHHHCCCHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCEE QAVLPGATATDFWETGGLPIEHLDKAIVMPAEAMVDAALVGFDRGELVTIPPLHAIEQWN EEEECCCCCCCHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHHHHHHCC AYEGARQAMAGLLSTNTPAPRYATGR HHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TQTHLGTALVTGASSGIGAIYADRLARRGYDLILVARNRDKLDTLARRITDDTQRVVEV CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH FPADLNDRQSLARVEEKLRQDASITLLVNNAGVGTHTPLLDSDVDAMNRMIDLNVTALTR CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHH LTYAAVPGFVARGRGAIINISSIVGIAPEILNGVYGGSKAFVLAFSQSLHHELAAKGLRV HHHHHCCCHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCEE QAVLPGATATDFWETGGLPIEHLDKAIVMPAEAMVDAALVGFDRGELVTIPPLHAIEQWN EEEECCCCCCCHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHHHHHHCC AYEGARQAMAGLLSTNTPAPRYATGR HHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA