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The map label for this gene is caiB [H]

Identifier: 94313371

GI number: 94313371

Start: 1042920

End: 1044101

Strand: Direct

Name: caiB [H]

Synonym: Rmet_4446

Alternate gene names: 94313371

Gene position: 1042920-1044101 (Clockwise)

Preceding gene: 94313370

Following gene: 94313372

Centisome position: 40.42

GC content: 65.57

Gene sequence:

>1182_bases
GTGGGATCTGGACCGCTTTCCCGCTTCACCGTGCTGGACCTGACGCGCGTGCGTTCGGGCCCGGCTGCCGTGCGTCAGTT
TGCTGACTGGGGCGCGAACGTCATCAAGATCGAAGAGCCGGGGCTGGCGCCCGACGACCGGCCCGGTGGCTCGGCGCAGG
TGGCCGACTACCAGAACACGCATCGCAACAAGCAGAGCATCACGCTGAACCTCAAGCATCCCGAAGGTCGCGCGTTGTTT
CTTGACCTCGTGCGCAAGGCCGACGTGGTGGTGGAGAACTACCGTCCCTCGGTGAAATTCAAGCTCGGCATCGACTACGA
GTCGCTGCGCAAGGTGAATCCGCGCATTGTCTACGGCAGCGTTTCCGGCTTCGGCCAGGATGGGCCGTATCACGACCGTC
CGGGCCTGGACCAGATTGCGCAGGGCATCTCGGGGATGATGTCCGTGACTGGCGAACCCGGGCGGGGACCGATGCGCGCG
GGCATACCGGTTGCCGATCTGACCGCGGGCCTGTTCTGCGCGATCGGCGTGATGGTGGCATTGCTGGAGCGCGAGGTGTC
AGGGCAGGGGCAATGGGTACAGACCTCGCTGCTGCAGTCGCAGCTGTGGATGATGGATTTCCAGGCAATGCGCTGGCTGA
TGAATGGCGAAGTGCCGGGCCAGAGCGGCAACGATCACCCGACCAGCAGCCCGACCGGCGTCTTCCCCACGGCGGACGGT
CACATGAACATCGCCGCCATGGGCAACGACATCTTCGCCCGCCTTTGCAACGTACTGGGCGCGCCCGAACTGGTGCAGGA
CGAGCGGTTCCGGACCGTGCCGCTGCGCGCGCGCCATCGCGCGGCACTGGGCGCGGAGATTGCCGAACGCACCCGTACCC
GCACGACGCAGGAATGGATCGCGCGCATGAACGAGGAAGGCGTGCCATGCGGCCCGATTCTCAATATGAAGGAAGCATTC
GCCGATCCGCAGGTGGAGCATCTGCGCATGAGCCAGCCCATCGATCATCCGACGCTCGGGCCGATTTCGGTCGTAGGCCA
GGCGGTGACGCTGAGCCGCACGCCGATGGGGAAACTGGCGCCGGCTCCGGAAAGCGGGGAACACAACCTTGACGTCTATC
GCGCCTTGCTTGGTCTGGACGCGGCGAAGGTCGAGGCGCTCGCCGCGCAGGGTGTCATCTGA

Upstream 100 bases:

>100_bases
ACCCCGTTTGCTCCCTCTTGTTTTATAGATAGGATGTCCAACATCCTACTTAACAACATCGGCAATCCGCGAACGCCGAG
CAAAGACATTGGAGACAACT

Downstream 100 bases:

>100_bases
TTGGGCGCTAACATATCCGGCATGAATGTCCCCGACACCGGGGCGCAAGACATGACGGAGATTCAGATGAAGGCCCCATT
CGATACCGAAGCCCGCGGAT

Product: Acyl-CoA transferase/carnitine dehydratase /bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MGSGPLSRFTVLDLTRVRSGPAAVRQFADWGANVIKIEEPGLAPDDRPGGSAQVADYQNTHRNKQSITLNLKHPEGRALF
LDLVRKADVVVENYRPSVKFKLGIDYESLRKVNPRIVYGSVSGFGQDGPYHDRPGLDQIAQGISGMMSVTGEPGRGPMRA
GIPVADLTAGLFCAIGVMVALLEREVSGQGQWVQTSLLQSQLWMMDFQAMRWLMNGEVPGQSGNDHPTSSPTGVFPTADG
HMNIAAMGNDIFARLCNVLGAPELVQDERFRTVPLRARHRAALGAEIAERTRTRTTQEWIARMNEEGVPCGPILNMKEAF
ADPQVEHLRMSQPIDHPTLGPISVVGQAVTLSRTPMGKLAPAPESGEHNLDVYRALLGLDAAKVEALAAQGVI

Sequences:

>Translated_393_residues
MGSGPLSRFTVLDLTRVRSGPAAVRQFADWGANVIKIEEPGLAPDDRPGGSAQVADYQNTHRNKQSITLNLKHPEGRALF
LDLVRKADVVVENYRPSVKFKLGIDYESLRKVNPRIVYGSVSGFGQDGPYHDRPGLDQIAQGISGMMSVTGEPGRGPMRA
GIPVADLTAGLFCAIGVMVALLEREVSGQGQWVQTSLLQSQLWMMDFQAMRWLMNGEVPGQSGNDHPTSSPTGVFPTADG
HMNIAAMGNDIFARLCNVLGAPELVQDERFRTVPLRARHRAALGAEIAERTRTRTTQEWIARMNEEGVPCGPILNMKEAF
ADPQVEHLRMSQPIDHPTLGPISVVGQAVTLSRTPMGKLAPAPESGEHNLDVYRALLGLDAAKVEALAAQGVI
>Mature_392_residues
GSGPLSRFTVLDLTRVRSGPAAVRQFADWGANVIKIEEPGLAPDDRPGGSAQVADYQNTHRNKQSITLNLKHPEGRALFL
DLVRKADVVVENYRPSVKFKLGIDYESLRKVNPRIVYGSVSGFGQDGPYHDRPGLDQIAQGISGMMSVTGEPGRGPMRAG
IPVADLTAGLFCAIGVMVALLEREVSGQGQWVQTSLLQSQLWMMDFQAMRWLMNGEVPGQSGNDHPTSSPTGVFPTADGH
MNIAAMGNDIFARLCNVLGAPELVQDERFRTVPLRARHRAALGAEIAERTRTRTTQEWIARMNEEGVPCGPILNMKEAFA
DPQVEHLRMSQPIDHPTLGPISVVGQAVTLSRTPMGKLAPAPESGEHNLDVYRALLGLDAAKVEALAAQGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=35.6234096692112, Blast_Score=269, Evalue=3e-72,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=33.4128878281623, Blast_Score=255, Evalue=5e-68,
Organism=Homo sapiens, GI300863126, Length=393, Percent_Identity=33.0788804071247, Blast_Score=218, Evalue=6e-57,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=30.5489260143198, Blast_Score=214, Evalue=8e-56,
Organism=Homo sapiens, GI42794625, Length=319, Percent_Identity=29.4670846394984, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI266456254, Length=319, Percent_Identity=29.4670846394984, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI266458393, Length=278, Percent_Identity=30.9352517985612, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458397, Length=203, Percent_Identity=31.5270935960591, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=32.8571428571429, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=33.0882352941176, Blast_Score=79, Evalue=8e-15,
Organism=Escherichia coli, GI87082093, Length=330, Percent_Identity=36.3636363636364, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI1788717, Length=411, Percent_Identity=29.683698296837, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1786222, Length=334, Percent_Identity=29.0419161676647, Blast_Score=107, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=205, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=31.1392405063291, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI24585488, Length=372, Percent_Identity=28.2258064516129, Blast_Score=114, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42566; Mature: 42435

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSGPLSRFTVLDLTRVRSGPAAVRQFADWGANVIKIEEPGLAPDDRPGGSAQVADYQNT
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEECCCHHH
HRNKQSITLNLKHPEGRALFLDLVRKADVVVENYRPSVKFKLGIDYESLRKVNPRIVYGS
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCEEEEEC
VSGFGQDGPYHDRPGLDQIAQGISGMMSVTGEPGRGPMRAGIPVADLTAGLFCAIGVMVA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LLEREVSGQGQWVQTSLLQSQLWMMDFQAMRWLMNGEVPGQSGNDHPTSSPTGVFPTADG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
HMNIAAMGNDIFARLCNVLGAPELVQDERFRTVPLRARHRAALGAEIAERTRTRTTQEWI
CEEEEECCCHHHHHHHHHHCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHCCHHHHH
ARMNEEGVPCGPILNMKEAFADPQVEHLRMSQPIDHPTLGPISVVGQAVTLSRTPMGKLA
HHHCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHCCCEEECCCCCCCCC
PAPESGEHNLDVYRALLGLDAAKVEALAAQGVI
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GSGPLSRFTVLDLTRVRSGPAAVRQFADWGANVIKIEEPGLAPDDRPGGSAQVADYQNT
CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEECCCHHH
HRNKQSITLNLKHPEGRALFLDLVRKADVVVENYRPSVKFKLGIDYESLRKVNPRIVYGS
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCEEEEEC
VSGFGQDGPYHDRPGLDQIAQGISGMMSVTGEPGRGPMRAGIPVADLTAGLFCAIGVMVA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LLEREVSGQGQWVQTSLLQSQLWMMDFQAMRWLMNGEVPGQSGNDHPTSSPTGVFPTADG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
HMNIAAMGNDIFARLCNVLGAPELVQDERFRTVPLRARHRAALGAEIAERTRTRTTQEWI
CEEEEECCCHHHHHHHHHHCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHCCHHHHH
ARMNEEGVPCGPILNMKEAFADPQVEHLRMSQPIDHPTLGPISVVGQAVTLSRTPMGKLA
HHHCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHCCCEEECCCCCCCCC
PAPESGEHNLDVYRALLGLDAAKVEALAAQGVI
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]