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The map label for this gene is nocR [H]

Identifier: 94313370

GI number: 94313370

Start: 1041839

End: 1042729

Strand: Direct

Name: nocR [H]

Synonym: Rmet_4445

Alternate gene names: 94313370

Gene position: 1041839-1042729 (Clockwise)

Preceding gene: 94313359

Following gene: 94313371

Centisome position: 40.38

GC content: 67.9

Gene sequence:

>891_bases
ATGCCGCGCGCGCCAAGTTTCCGTGAAATCGAGGTCTTTCGCGCCGTGATGCTGAGTGGCACGACAACGGCCGCCGCCGC
CATGCTGCACACCACGCAGCCGTCGGTGAGCCGGGTGCTGGCGCAGATGCAGACCGGTACCGACCTGAAACTGTTCGATA
TGGAAAAGGGCAGGCTGCGGCCCACGCCCGAGGCGCAGCGGCTGTTCGAAACCGTACAGGGGCATTTCCAGGGGTTGGCG
CGTATCGGGCAGGAGGTCCATCTGCTGCGCCGTTCCGGTACGGGCCTGCTTCGGCTCGGCTGCACGCCGACGCTTGGTCT
GGGGCCGATGCCCGGTATCGTGGCGCGCTTTATCGAGCGGCATCCCGATGTATCGGTGGACCTGCAGACCGTCGGCAGCC
ACCAGCTTGGCGAAGGGCTGCTGCACGGACGATTCGATCTGGTGCTGGCCACGGGGCGGCTCGACCATCCCCAGTTCGAT
ATCCGCGTCATGCACCGGTCACCCGCCGTATGCGTGATGCATCCCGGGCACGTCATGGCATCGCGGCGGCGGATTCGCGC
GGCGGACCTGTCGGGCCAGCGGCTGCTGACCCTGAACGCGGACGACGAACTCAGTGTCGCGCTCTGGCAGGCGCTGCAAG
AAGCCGGGGCGGAACCGGCCGCGACGCTGCAAACCACTTATTCGAGCACGATCTGCCGGCTTGCGGCCGAGGGTGCCGGC
ATCGGTATCGTCAATCCGTACGCCGCGCGCGTGTTCGGCCAGGCCCTGACGGTGGTGCCGCTGGTGCCGGCGATCGCCGT
GGAGGTGCGCCTGGCTCATGCGGGCCATCTCGCCAGTTCGCGGCTGACGGAGGTCTTTGCCAGCCTGGTGGCCGAGGGGC
TCGGGGCTTAG

Upstream 100 bases:

>100_bases
GGAGTGTAGGCGCGGGCAGCCATGCCGGATAATTCAAATTTGCGCGGACCCTATACGCCGCTGATATACACTCGGTGACC
CCCCATCGAAGCCAGTCCAT

Downstream 100 bases:

>100_bases
GCGTCCTGACGCAGAGCGGGCCGGGCGCGCCTCGGCCATCTTTGCATTCCCTTTCCTGATTCGATCTGCAAACCAGCCAT
GAGCGGGTTAACCCCGTTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MPRAPSFREIEVFRAVMLSGTTTAAAAMLHTTQPSVSRVLAQMQTGTDLKLFDMEKGRLRPTPEAQRLFETVQGHFQGLA
RIGQEVHLLRRSGTGLLRLGCTPTLGLGPMPGIVARFIERHPDVSVDLQTVGSHQLGEGLLHGRFDLVLATGRLDHPQFD
IRVMHRSPAVCVMHPGHVMASRRRIRAADLSGQRLLTLNADDELSVALWQALQEAGAEPAATLQTTYSSTICRLAAEGAG
IGIVNPYAARVFGQALTVVPLVPAIAVEVRLAHAGHLASSRLTEVFASLVAEGLGA

Sequences:

>Translated_296_residues
MPRAPSFREIEVFRAVMLSGTTTAAAAMLHTTQPSVSRVLAQMQTGTDLKLFDMEKGRLRPTPEAQRLFETVQGHFQGLA
RIGQEVHLLRRSGTGLLRLGCTPTLGLGPMPGIVARFIERHPDVSVDLQTVGSHQLGEGLLHGRFDLVLATGRLDHPQFD
IRVMHRSPAVCVMHPGHVMASRRRIRAADLSGQRLLTLNADDELSVALWQALQEAGAEPAATLQTTYSSTICRLAAEGAG
IGIVNPYAARVFGQALTVVPLVPAIAVEVRLAHAGHLASSRLTEVFASLVAEGLGA
>Mature_295_residues
PRAPSFREIEVFRAVMLSGTTTAAAAMLHTTQPSVSRVLAQMQTGTDLKLFDMEKGRLRPTPEAQRLFETVQGHFQGLAR
IGQEVHLLRRSGTGLLRLGCTPTLGLGPMPGIVARFIERHPDVSVDLQTVGSHQLGEGLLHGRFDLVLATGRLDHPQFDI
RVMHRSPAVCVMHPGHVMASRRRIRAADLSGQRLLTLNADDELSVALWQALQEAGAEPAATLQTTYSSTICRLAAEGAGI
GIVNPYAARVFGQALTVVPLVPAIAVEVRLAHAGHLASSRLTEVFASLVAEGLGA

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=293, Percent_Identity=34.8122866894198, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787806, Length=239, Percent_Identity=24.2677824267782, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI157672245, Length=228, Percent_Identity=23.6842105263158, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=149, Percent_Identity=28.1879194630872, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693105, Length=234, Percent_Identity=19.6581196581197, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786401, Length=242, Percent_Identity=24.7933884297521, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31773; Mature: 31642

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRAPSFREIEVFRAVMLSGTTTAAAAMLHTTQPSVSRVLAQMQTGTDLKLFDMEKGRLR
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCC
PTPEAQRLFETVQGHFQGLARIGQEVHLLRRSGTGLLRLGCTPTLGLGPMPGIVARFIER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH
HPDVSVDLQTVGSHQLGEGLLHGRFDLVLATGRLDHPQFDIRVMHRSPAVCVMHPGHVMA
CCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCHHHH
SRRRIRAADLSGQRLLTLNADDELSVALWQALQEAGAEPAATLQTTYSSTICRLAAEGAG
HHHHHHEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
IGIVNPYAARVFGQALTVVPLVPAIAVEVRLAHAGHLASSRLTEVFASLVAEGLGA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PRAPSFREIEVFRAVMLSGTTTAAAAMLHTTQPSVSRVLAQMQTGTDLKLFDMEKGRLR
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCC
PTPEAQRLFETVQGHFQGLARIGQEVHLLRRSGTGLLRLGCTPTLGLGPMPGIVARFIER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH
HPDVSVDLQTVGSHQLGEGLLHGRFDLVLATGRLDHPQFDIRVMHRSPAVCVMHPGHVMA
CCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCHHHH
SRRRIRAADLSGQRLLTLNADDELSVALWQALQEAGAEPAATLQTTYSSTICRLAAEGAG
HHHHHHEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
IGIVNPYAARVFGQALTVVPLVPAIAVEVRLAHAGHLASSRLTEVFASLVAEGLGA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]