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The map label for this gene is caiB [H]

Identifier: 94313345

GI number: 94313345

Start: 1015300

End: 1016541

Strand: Reverse

Name: caiB [H]

Synonym: Rmet_4420

Alternate gene names: 94313345

Gene position: 1016541-1015300 (Counterclockwise)

Preceding gene: 94313347

Following gene: 94313343

Centisome position: 39.4

GC content: 66.51

Gene sequence:

>1242_bases
ATGCAAACCCACGCAGACACCCAGACCCATCCCCCCGGCGCCCTTGCCGGCCTGCGCGTGGTCGACCTCACGCAGATGCT
CGCCGGACCGTTCTGCACCCAGGTGCTGGCCGATCACGGCGCGGACGTGATCAAGGTGGAAGCGATGACCGGTGATGGCA
CCCGCATCACCGGCCCCTTCTGTGACGACGACACGCTGCGCGAATTCGGCGGCTACTTCCAGAGCGTCAATCGCAACAAG
CGGTCGATCGCGGTGGACCTCAAGAGCAGCACTGGGCGCGAGATCCTGCGCAAGCTGATAGACAGCGCCGACGTCGTGGT
CGAGAACTTTCGCGCCGGCGTCATGGAGCGCCTTGGCCTGTCCTACGAAACCCTGCGCGAAACCAATCCGCGTCTGGTCT
ATGGCACGGTACGCGGCTTCGGCGACCCACGCAGCGGCGAAAGCCCCTACGCGCAGTGGCCTGCCTACGACGTCGTGTCG
CAGGCGATGGGCGGCATGATGGGCATCACCGGCCCCGACCGGGACACTGCTACGAAGATCGGCCCGGGCGTCGGCGATAC
GATACCTGCGCTGATGCTCTGCATTGGCATTCTCTCCGCCGTGCACCGCGCGCGCGGCACCGGGCACGGTCAGTTCGTCG
ATGTGGCCATGACCGATGCGGTACTGGCCATGTGCGAGCGCATCGTCTACCAGACGTCCTACACCGGCGTGGTACCAGCG
CCCGAAGGCAACCGCCACCCGTTGCTCTGCCCCTTCGGCCTGTTCCGCTCGCGCGACGGCCAGGTCTCGATTGCCTGCGC
CACCGATGCATTCTGGGAAAAGCTGGCCATCGCCATCGGCCGCCCGGACATGGCCACCGACGAGGCGTTCGCCACCAATG
CAGCCCGCGTGCAGCACCAGCAGCAGGTCATCGACGCGATCGAAGCATTCACCACCGTGCGCACAAAGGAAGAGATCGCT
GCCGTTCTCGGCGGCAAGGTGCCGTTCGGCCCGGTCTACACCGCCGCGGAGATCTTTGCTGACCCGCACTACGCGGTGCG
CGAGATGCTGGTCGAAGTCGAACAGCCCGGCTCGGCCAGACCGGTGAAGATCGCCGGCGTGCCCATCAAGCTGAGCGACA
CCCCTGGCGCGGTACGTCGGCGCGCGCCGCTGCTGGGCGAGCACACCGAGGAAATCCTGCTGGCCACCGGCTACACCGAA
CGGGACATCAAGGGCCTGCGGGAGACAAAAGCCGTTCGCTAG

Upstream 100 bases:

>100_bases
GCCGCGCTGGACACGCAGCCAGCCGCCGTTCTCTACCCGCGCCTGCATGACTGGTTCGCCGATGCCGCCGCCTGATACCC
CACACATCGGAGCCCCACGC

Downstream 100 bases:

>100_bases
AAAACACAGGACAACCAAAAACAAGCAACAAAGGAGACAGGACATGAACTTCGCGAGAACCGCACTGACGACCTTGCTAT
TGACGCTTGCCGTCATGCAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MQTHADTQTHPPGALAGLRVVDLTQMLAGPFCTQVLADHGADVIKVEAMTGDGTRITGPFCDDDTLREFGGYFQSVNRNK
RSIAVDLKSSTGREILRKLIDSADVVVENFRAGVMERLGLSYETLRETNPRLVYGTVRGFGDPRSGESPYAQWPAYDVVS
QAMGGMMGITGPDRDTATKIGPGVGDTIPALMLCIGILSAVHRARGTGHGQFVDVAMTDAVLAMCERIVYQTSYTGVVPA
PEGNRHPLLCPFGLFRSRDGQVSIACATDAFWEKLAIAIGRPDMATDEAFATNAARVQHQQQVIDAIEAFTTVRTKEEIA
AVLGGKVPFGPVYTAAEIFADPHYAVREMLVEVEQPGSARPVKIAGVPIKLSDTPGAVRRRAPLLGEHTEEILLATGYTE
RDIKGLRETKAVR

Sequences:

>Translated_413_residues
MQTHADTQTHPPGALAGLRVVDLTQMLAGPFCTQVLADHGADVIKVEAMTGDGTRITGPFCDDDTLREFGGYFQSVNRNK
RSIAVDLKSSTGREILRKLIDSADVVVENFRAGVMERLGLSYETLRETNPRLVYGTVRGFGDPRSGESPYAQWPAYDVVS
QAMGGMMGITGPDRDTATKIGPGVGDTIPALMLCIGILSAVHRARGTGHGQFVDVAMTDAVLAMCERIVYQTSYTGVVPA
PEGNRHPLLCPFGLFRSRDGQVSIACATDAFWEKLAIAIGRPDMATDEAFATNAARVQHQQQVIDAIEAFTTVRTKEEIA
AVLGGKVPFGPVYTAAEIFADPHYAVREMLVEVEQPGSARPVKIAGVPIKLSDTPGAVRRRAPLLGEHTEEILLATGYTE
RDIKGLRETKAVR
>Mature_413_residues
MQTHADTQTHPPGALAGLRVVDLTQMLAGPFCTQVLADHGADVIKVEAMTGDGTRITGPFCDDDTLREFGGYFQSVNRNK
RSIAVDLKSSTGREILRKLIDSADVVVENFRAGVMERLGLSYETLRETNPRLVYGTVRGFGDPRSGESPYAQWPAYDVVS
QAMGGMMGITGPDRDTATKIGPGVGDTIPALMLCIGILSAVHRARGTGHGQFVDVAMTDAVLAMCERIVYQTSYTGVVPA
PEGNRHPLLCPFGLFRSRDGQVSIACATDAFWEKLAIAIGRPDMATDEAFATNAARVQHQQQVIDAIEAFTTVRTKEEIA
AVLGGKVPFGPVYTAAEIFADPHYAVREMLVEVEQPGSARPVKIAGVPIKLSDTPGAVRRRAPLLGEHTEEILLATGYTE
RDIKGLRETKAVR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=382, Percent_Identity=30.6282722513089, Blast_Score=195, Evalue=6e-50,
Organism=Homo sapiens, GI300863124, Length=408, Percent_Identity=29.1666666666667, Blast_Score=185, Evalue=5e-47,
Organism=Homo sapiens, GI300863126, Length=382, Percent_Identity=29.8429319371728, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI13376042, Length=408, Percent_Identity=25.9803921568627, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI266456254, Length=405, Percent_Identity=29.3827160493827, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI42794625, Length=405, Percent_Identity=29.3827160493827, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI266458393, Length=271, Percent_Identity=30.9963099630996, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI266458397, Length=266, Percent_Identity=31.203007518797, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=38.1578947368421, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=37.5, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI87082093, Length=365, Percent_Identity=36.7123287671233, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1788717, Length=426, Percent_Identity=34.037558685446, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1786222, Length=406, Percent_Identity=28.5714285714286, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI32564160, Length=278, Percent_Identity=25.5395683453237, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24648431, Length=410, Percent_Identity=32.1951219512195, Blast_Score=215, Evalue=4e-56,
Organism=Drosophila melanogaster, GI24585488, Length=376, Percent_Identity=24.7340425531915, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44538; Mature: 44538

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTHADTQTHPPGALAGLRVVDLTQMLAGPFCTQVLADHGADVIKVEAMTGDGTRITGPF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEECCC
CDDDTLREFGGYFQSVNRNKRSIAVDLKSSTGREILRKLIDSADVVVENFRAGVMERLGL
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SYETLRETNPRLVYGTVRGFGDPRSGESPYAQWPAYDVVSQAMGGMMGITGPDRDTATKI
CHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCCCCCHHHC
GPGVGDTIPALMLCIGILSAVHRARGTGHGQFVDVAMTDAVLAMCERIVYQTSYTGVVPA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEC
PEGNRHPLLCPFGLFRSRDGQVSIACATDAFWEKLAIAIGRPDMATDEAFATNAARVQHQ
CCCCCCCEEECHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QQVIDAIEAFTTVRTKEEIAAVLGGKVPFGPVYTAAEIFADPHYAVREMLVEVEQPGSAR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
PVKIAGVPIKLSDTPGAVRRRAPLLGEHTEEILLATGYTERDIKGLRETKAVR
CEEEECEEEEECCCCHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQTHADTQTHPPGALAGLRVVDLTQMLAGPFCTQVLADHGADVIKVEAMTGDGTRITGPF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEECCC
CDDDTLREFGGYFQSVNRNKRSIAVDLKSSTGREILRKLIDSADVVVENFRAGVMERLGL
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SYETLRETNPRLVYGTVRGFGDPRSGESPYAQWPAYDVVSQAMGGMMGITGPDRDTATKI
CHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCCCCCHHHC
GPGVGDTIPALMLCIGILSAVHRARGTGHGQFVDVAMTDAVLAMCERIVYQTSYTGVVPA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEC
PEGNRHPLLCPFGLFRSRDGQVSIACATDAFWEKLAIAIGRPDMATDEAFATNAARVQHQ
CCCCCCCEEECHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QQVIDAIEAFTTVRTKEEIAAVLGGKVPFGPVYTAAEIFADPHYAVREMLVEVEQPGSAR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
PVKIAGVPIKLSDTPGAVRRRAPLLGEHTEEILLATGYTERDIKGLRETKAVR
CEEEECEEEEECCCCHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]