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The map label for this gene is tnpA [H]

Identifier: 94313343

GI number: 94313343

Start: 1013405

End: 1014433

Strand: Reverse

Name: tnpA [H]

Synonym: Rmet_4418

Alternate gene names: 94313343

Gene position: 1014433-1013405 (Counterclockwise)

Preceding gene: 94313345

Following gene: 94313340

Centisome position: 39.32

GC content: 61.81

Gene sequence:

>1029_bases
ATGACCAAGAAAAATTACCAGCAGTTGAGTGAGACCGAACGCCATGCGATAGCCCTGGGGCTGCAGCAAAAGCAAAGCCT
CAGCGCCATAGCCAGGGCCCTGGGGCGTGACAAGAGCACTATCAGCCGCGAGTGCAATCGCAATGCAGGCGGCAAGGGCT
ACGCCTCCAAGTTCGCCCAGCAGCGCAGTGACAATCGCAAACGCCAAGCCCGTCCCAGCCCCAAGCTGCACCGCCAAGGG
CCCTTGTTCCCGCTGGTTTGCGACTACCTGCGCCACAAGTGGTCGCCCCAGCAAATCGCCAACGAACTCCAGCGTCTTCA
CCCACAGGATCGCCGCTTGCAAGCCTCACACGAAAGCATCTACACCTGCATCTACGCCCAGCCCCGGGGAGAGCTCAAGA
AGGAGCTGGTGTCCTGCCTGCGCATGGCCCACGCCAAACGTTGGCCCCGCTCCAGGGGAAAGGATCGCCGCAAGGAGACG
CAAGACTTGCTGAGCATCCATGTGCGAGCACCCGAGATCGAGGATCGCCAGTTGCCCGGCCACTGGGAGGGTGATCTGAT
CAAAGGCAAGGCTAACGCCAGTGCGATTGGCACGCTGGTCGAGCGCACCACCCGTCTGGTGGTGCTGGTCAAGCTGCCAC
ACCCCAACCCCGCCACAGCGGCGCATGTACTGCAAGCCTTCAGCGACAAGCTCAAGACAATAGCCCAGCCGATGCGCCAG
ACCCTGACCTACGACCGGGGCAGCGAGATGGCCGAGCACCGCCAGCTCAGCGAGAACACAGGCATGAAGGTGTACTTCTG
CGACCCCTACAGTCCCTGGCAAAGGGGGAGCAACGAGAACACCAATGGGCTCTTGCGCCAGTACTTCCCCAAGGGGACTG
ATCTGAGTGGCTACAGCCAGGAGCAGTTGGACGCTGTGGCCGATGAGCTCAATGGACGGCCCAGGATGACTCTGGGGTGG
CGCAAGCCCATCGAGGTCTATGCCGAGCATTTGGCGCGGCTGGCCCAGCAGCCGGATTTAGTGCATTGA

Upstream 100 bases:

>100_bases
GGCTTTCCGGGCTTCCGTGGCAACCCATGGATCGGCGTCGTGGCGCCGAAGAACTTGGCGGCCTCAATTCCGAAGTGCAA
CACCGAGAATTGAGGCCAAG

Downstream 100 bases:

>100_bases
GTTTTTGTTGCACTTGGACTTGAAACCGCCCTTGCCCAAACCGGTAGCGGACAAGCTGTCCGCGGAGATCATCCGCATCT
CGAAGACCCCGGAGTGGACC

Product: transposase IS1088

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTKKNYQQLSETERHAIALGLQQKQSLSAIARALGRDKSTISRECNRNAGGKGYASKFAQQRSDNRKRQARPSPKLHRQG
PLFPLVCDYLRHKWSPQQIANELQRLHPQDRRLQASHESIYTCIYAQPRGELKKELVSCLRMAHAKRWPRSRGKDRRKET
QDLLSIHVRAPEIEDRQLPGHWEGDLIKGKANASAIGTLVERTTRLVVLVKLPHPNPATAAHVLQAFSDKLKTIAQPMRQ
TLTYDRGSEMAEHRQLSENTGMKVYFCDPYSPWQRGSNENTNGLLRQYFPKGTDLSGYSQEQLDAVADELNGRPRMTLGW
RKPIEVYAEHLARLAQQPDLVH

Sequences:

>Translated_342_residues
MTKKNYQQLSETERHAIALGLQQKQSLSAIARALGRDKSTISRECNRNAGGKGYASKFAQQRSDNRKRQARPSPKLHRQG
PLFPLVCDYLRHKWSPQQIANELQRLHPQDRRLQASHESIYTCIYAQPRGELKKELVSCLRMAHAKRWPRSRGKDRRKET
QDLLSIHVRAPEIEDRQLPGHWEGDLIKGKANASAIGTLVERTTRLVVLVKLPHPNPATAAHVLQAFSDKLKTIAQPMRQ
TLTYDRGSEMAEHRQLSENTGMKVYFCDPYSPWQRGSNENTNGLLRQYFPKGTDLSGYSQEQLDAVADELNGRPRMTLGW
RKPIEVYAEHLARLAQQPDLVH
>Mature_341_residues
TKKNYQQLSETERHAIALGLQQKQSLSAIARALGRDKSTISRECNRNAGGKGYASKFAQQRSDNRKRQARPSPKLHRQGP
LFPLVCDYLRHKWSPQQIANELQRLHPQDRRLQASHESIYTCIYAQPRGELKKELVSCLRMAHAKRWPRSRGKDRRKETQ
DLLSIHVRAPEIEDRQLPGHWEGDLIKGKANASAIGTLVERTTRLVVLVKLPHPNPATAAHVLQAFSDKLKTIAQPMRQT
LTYDRGSEMAEHRQLSENTGMKVYFCDPYSPWQRGSNENTNGLLRQYFPKGTDLSGYSQEQLDAVADELNGRPRMTLGWR
KPIEVYAEHLARLAQQPDLVH

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786450, Length=334, Percent_Identity=42.814371257485, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1790736, Length=334, Percent_Identity=42.5149700598802, Blast_Score=250, Evalue=8e-68,
Organism=Escherichia coli, GI1787671, Length=334, Percent_Identity=42.5149700598802, Blast_Score=250, Evalue=8e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 39133; Mature: 39002

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS50994 INTEGRASE ; PS01043 TRANSPOSASE_IS30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKNYQQLSETERHAIALGLQQKQSLSAIARALGRDKSTISRECNRNAGGKGYASKFAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
QRSDNRKRQARPSPKLHRQGPLFPLVCDYLRHKWSPQQIANELQRLHPQDRRLQASHESI
HHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHE
YTCIYAQPRGELKKELVSCLRMAHAKRWPRSRGKDRRKETQDLLSIHVRAPEIEDRQLPG
EEEEEECCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
HWEGDLIKGKANASAIGTLVERTTRLVVLVKLPHPNPATAAHVLQAFSDKLKTIAQPMRQ
CCCCCEEECCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TLTYDRGSEMAEHRQLSENTGMKVYFCDPYSPWQRGSNENTNGLLRQYFPKGTDLSGYSQ
HHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCH
EQLDAVADELNGRPRMTLGWRKPIEVYAEHLARLAQQPDLVH
HHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TKKNYQQLSETERHAIALGLQQKQSLSAIARALGRDKSTISRECNRNAGGKGYASKFAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
QRSDNRKRQARPSPKLHRQGPLFPLVCDYLRHKWSPQQIANELQRLHPQDRRLQASHESI
HHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHE
YTCIYAQPRGELKKELVSCLRMAHAKRWPRSRGKDRRKETQDLLSIHVRAPEIEDRQLPG
EEEEEECCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
HWEGDLIKGKANASAIGTLVERTTRLVVLVKLPHPNPATAAHVLQAFSDKLKTIAQPMRQ
CCCCCEEECCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TLTYDRGSEMAEHRQLSENTGMKVYFCDPYSPWQRGSNENTNGLLRQYFPKGTDLSGYSQ
HHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCH
EQLDAVADELNGRPRMTLGWRKPIEVYAEHLARLAQQPDLVH
HHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1334071 [H]