Click here to switch to the map view.

The map label for this gene is ydfH [H]

Identifier: 94313282

GI number: 94313282

Start: 952413

End: 953135

Strand: Direct

Name: ydfH [H]

Synonym: Rmet_4357

Alternate gene names: 94313282

Gene position: 952413-953135 (Clockwise)

Preceding gene: 94313281

Following gene: 94313285

Centisome position: 36.91

GC content: 62.66

Gene sequence:

>723_bases
ATGTCTGCCCAAAGCCAAACCGACGTCCAGCCGACTTCCGGCCTGACCCTTTCACTGCAGCCGATCAATGCGGGTGCCAG
CCTGCGTGACCAGGCCTACGCGATGCTGCGCCAGGCGATTGCCGATGCCGACATCTACCAGTCGCGTGACGAAGTCCGTC
TGGACGAGCGCGTGCTGTCCGAAGCGCTCGGCGTCAGTCGCACGCCGATTCGCGAAGCCATGACCCTTCTGGAGCAGGAA
GGCTTCCTGCGCACGGTGCCGCGCCGCGGCATCTACATCACGCGCAAGACCAAACGCGAGATCGTCGAGATGATCCAGGT
CTGGGGCGCGCTGGAAAGCATGGCCGCGCGGCTGGCCACGCTGCACGCCAGCGACGAGGAAATCGGCAAGCTGCGGCATA
TGTTCGACAGCTTCCGCGATGCCACGCCGGCCGAGCATATCGAGGAATACTCCGACGCCAACATCGCCTTCCATCAGGCG
ATCGTGCAGTTGTCGAAGTCGCAGATCATCATGGACTCGATCAAGAACATCTTTGTCCATGTGCGTGCGATCCGGAAGAT
GACGATCTCGCAGAGCGACCGCGCCGCGCGCTCGATCGTCGATCACCTGCGCATCATCGAGGCGCTGGAGAAGCGCGATA
CGGAGCTGGCCGAGCGGCTGGTGCGCCAGCACTCGCTGGATCTGGCGGACTACGTCGAGAAGCACTGCGATTTTCTGGAT
TGA

Upstream 100 bases:

>100_bases
ACTTGACGTCATGCGTCACGCGCCAACCTGGTCCTGAATCGGCGAGTGCCATCGGCGGCCATTTGGGTCGCCGGGGCGCC
GGCCATTTACGAGTGCACTC

Downstream 100 bases:

>100_bases
AAAGGGAGAGGGTGCGGAGGTTCAAATCGCGACTTATCGGTGATTGAGCCGCTGCCTCTCTCCCCTGTCCCCGCTCCCGC
ACTGCGGGAGCGGGGACAAC

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSAQSQTDVQPTSGLTLSLQPINAGASLRDQAYAMLRQAIADADIYQSRDEVRLDERVLSEALGVSRTPIREAMTLLEQE
GFLRTVPRRGIYITRKTKREIVEMIQVWGALESMAARLATLHASDEEIGKLRHMFDSFRDATPAEHIEEYSDANIAFHQA
IVQLSKSQIIMDSIKNIFVHVRAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD

Sequences:

>Translated_240_residues
MSAQSQTDVQPTSGLTLSLQPINAGASLRDQAYAMLRQAIADADIYQSRDEVRLDERVLSEALGVSRTPIREAMTLLEQE
GFLRTVPRRGIYITRKTKREIVEMIQVWGALESMAARLATLHASDEEIGKLRHMFDSFRDATPAEHIEEYSDANIAFHQA
IVQLSKSQIIMDSIKNIFVHVRAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD
>Mature_239_residues
SAQSQTDVQPTSGLTLSLQPINAGASLRDQAYAMLRQAIADADIYQSRDEVRLDERVLSEALGVSRTPIREAMTLLEQEG
FLRTVPRRGIYITRKTKREIVEMIQVWGALESMAARLATLHASDEEIGKLRHMFDSFRDATPAEHIEEYSDANIAFHQAI
VQLSKSQIIMDSIKNIFVHVRAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=229, Percent_Identity=26.2008733624454, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27300; Mature: 27169

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQSQTDVQPTSGLTLSLQPINAGASLRDQAYAMLRQAIADADIYQSRDEVRLDERVLS
CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
EALGVSRTPIREAMTLLEQEGFLRTVPRRGIYITRKTKREIVEMIQVWGALESMAARLAT
HHHCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
LHASDEEIGKLRHMFDSFRDATPAEHIEEYSDANIAFHQAIVQLSKSQIIMDSIKNIFVH
HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SAQSQTDVQPTSGLTLSLQPINAGASLRDQAYAMLRQAIADADIYQSRDEVRLDERVLS
CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
EALGVSRTPIREAMTLLEQEGFLRTVPRRGIYITRKTKREIVEMIQVWGALESMAARLAT
HHHCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
LHASDEEIGKLRHMFDSFRDATPAEHIEEYSDANIAFHQAIVQLSKSQIIMDSIKNIFVH
HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]