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The map label for this gene is ydhJ [H]

Identifier: 94313202

GI number: 94313202

Start: 866978

End: 867871

Strand: Reverse

Name: ydhJ [H]

Synonym: Rmet_4276

Alternate gene names: 94313202

Gene position: 867871-866978 (Counterclockwise)

Preceding gene: 94313203

Following gene: 94313197

Centisome position: 33.64

GC content: 63.09

Gene sequence:

>894_bases
ATGCGCCAGAACCGCCACATGAAACTCAATCTCCAATCCCTGCTCCGCATCCTGGCAACCTGTCTGTTGGCTACGGCTGC
CATTGCCCTGGGTTATAGCCTTTGGGCCCACTACATGTACTCGCCCTGGACCCGCGACGGACGGGTACGTGCCGAAGTGA
TCAACATTGCCGCGGATGTCTCCGGGCTGGTGGCCCGTGTGGCCGTGCGCGACAACCAGGAGATACGCAAGGGCGACCTG
CTCTTCGTCATCGATCAGGAACGATTCCGCCAGGCACTTGCACAGGCCGAGGCACAGGCCCAGGCGCGAAAGGCGGAACT
CGACATGCGACATCAGCAAGCCATGCGCCGGCGCGATCTGGACAGTTCGGTGATCTCCGTCGAAAGCCGCGAAGATGTCA
GCGCTCAGGAGAAGCAGGCCCTGGCCAACTACCAGGCCAGCCTGGCGGCGGTGGACACAGCCAGGCTGAACCTGCAACGC
AGCGAAGTACGCTCGCCGGCGGACGGCTACGTGACCAACCTCAACCTGTATGCCGGCGACTATGTAAGCGCAGGCACCGC
GCGAATGGCGGTGATCGACAAGCATTCCTATTGGGTCTATGGGTACTTTGAAGAAACCAAGCTGGCCAACGTGCAGGTCG
GCGCGAAAGTGGAGGTCCGTCTGATGTCCGGTGGAGCCTCGTTGCGAGGACACGTGGAGAGCCTAGCGCGAGGCATCGCC
GACCGGGACAACCCCACCGGCGCAAACCTGCTCGCCGATGTGAATCCGGTGTTCACCTGGATCCGGCTGGCGCAGCGCGT
GCCGGTGCGAATACACCTCGACGAAGAGCCTGCCGGACTGCCGCTCGCGATGGGAACAACGTGCACGGTCACGGTGCAGC
CGGGCAACCCGTAG

Upstream 100 bases:

>100_bases
CACGCGCCGGAATATATCGGTTGGTATGGCATCCGGCCCTGTTCCGGGTCGCGCTATTCGCCTGCCTTTTCAGCGGCATT
GGACTCCTGCTTTGGGACTG

Downstream 100 bases:

>100_bases
GACCGGCAACGCGACGCCGCCCGCTGTCCCCGGGGCCGGCAGGCGACTTACTCAGTTCTTTAGACCGGCCAGCGCGGCGA
TCCGCGTGGTTTTCCGGGTC

Product: secretion protein HlyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MRQNRHMKLNLQSLLRILATCLLATAAIALGYSLWAHYMYSPWTRDGRVRAEVINIAADVSGLVARVAVRDNQEIRKGDL
LFVIDQERFRQALAQAEAQAQARKAELDMRHQQAMRRRDLDSSVISVESREDVSAQEKQALANYQASLAAVDTARLNLQR
SEVRSPADGYVTNLNLYAGDYVSAGTARMAVIDKHSYWVYGYFEETKLANVQVGAKVEVRLMSGGASLRGHVESLARGIA
DRDNPTGANLLADVNPVFTWIRLAQRVPVRIHLDEEPAGLPLAMGTTCTVTVQPGNP

Sequences:

>Translated_297_residues
MRQNRHMKLNLQSLLRILATCLLATAAIALGYSLWAHYMYSPWTRDGRVRAEVINIAADVSGLVARVAVRDNQEIRKGDL
LFVIDQERFRQALAQAEAQAQARKAELDMRHQQAMRRRDLDSSVISVESREDVSAQEKQALANYQASLAAVDTARLNLQR
SEVRSPADGYVTNLNLYAGDYVSAGTARMAVIDKHSYWVYGYFEETKLANVQVGAKVEVRLMSGGASLRGHVESLARGIA
DRDNPTGANLLADVNPVFTWIRLAQRVPVRIHLDEEPAGLPLAMGTTCTVTVQPGNP
>Mature_297_residues
MRQNRHMKLNLQSLLRILATCLLATAAIALGYSLWAHYMYSPWTRDGRVRAEVINIAADVSGLVARVAVRDNQEIRKGDL
LFVIDQERFRQALAQAEAQAQARKAELDMRHQQAMRRRDLDSSVISVESREDVSAQEKQALANYQASLAAVDTARLNLQR
SEVRSPADGYVTNLNLYAGDYVSAGTARMAVIDKHSYWVYGYFEETKLANVQVGAKVEVRLMSGGASLRGHVESLARGIA
DRDNPTGANLLADVNPVFTWIRLAQRVPVRIHLDEEPAGLPLAMGTTCTVTVQPGNP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=280, Percent_Identity=40.7142857142857, Blast_Score=230, Evalue=8e-62,
Organism=Escherichia coli, GI1789637, Length=286, Percent_Identity=37.4125874125874, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1790519, Length=308, Percent_Identity=25.974025974026, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788711, Length=340, Percent_Identity=28.2352941176471, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789041, Length=320, Percent_Identity=26.25, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 32870; Mature: 32870

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQNRHMKLNLQSLLRILATCLLATAAIALGYSLWAHYMYSPWTRDGRVRAEVINIAADV
CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHH
SGLVARVAVRDNQEIRKGDLLFVIDQERFRQALAQAEAQAQARKAELDMRHQQAMRRRDL
HHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSSVISVESREDVSAQEKQALANYQASLAAVDTARLNLQRSEVRSPADGYVTNLNLYAGD
CCCEEEECCCCCCCHHHHHHHHHHHHHHHEEHHHHHEEEHHHCCCCCCCEEEEEEEEECC
YVSAGTARMAVIDKHSYWVYGYFEETKLANVQVGAKVEVRLMSGGASLRGHVESLARGIA
CCCCCCEEEEEEECCCEEEEEEECCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHC
DRDNPTGANLLADVNPVFTWIRLAQRVPVRIHLDEEPAGLPLAMGTTCTVTVQPGNP
CCCCCCCCCCEECCHHHHHHHHHHHCCCEEEEECCCCCCCEEEECCEEEEEEECCCC
>Mature Secondary Structure
MRQNRHMKLNLQSLLRILATCLLATAAIALGYSLWAHYMYSPWTRDGRVRAEVINIAADV
CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHH
SGLVARVAVRDNQEIRKGDLLFVIDQERFRQALAQAEAQAQARKAELDMRHQQAMRRRDL
HHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSSVISVESREDVSAQEKQALANYQASLAAVDTARLNLQRSEVRSPADGYVTNLNLYAGD
CCCEEEECCCCCCCHHHHHHHHHHHHHHHEEHHHHHEEEHHHCCCCCCCEEEEEEEEECC
YVSAGTARMAVIDKHSYWVYGYFEETKLANVQVGAKVEVRLMSGGASLRGHVESLARGIA
CCCCCCEEEEEEECCCEEEEEEECCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHC
DRDNPTGANLLADVNPVFTWIRLAQRVPVRIHLDEEPAGLPLAMGTTCTVTVQPGNP
CCCCCCCCCCEECCHHHHHHHHHHHCCCEEEEECCCCCCCEEEECCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]