| Definition | Cupriavidus metallidurans CH34 megaplasmid, complete sequence. |
|---|---|
| Accession | NC_007974 |
| Length | 2,580,084 |
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The map label for this gene is lcfB [H]
Identifier: 94313195
GI number: 94313195
Start: 859545
End: 861164
Strand: Direct
Name: lcfB [H]
Synonym: Rmet_4269
Alternate gene names: 94313195
Gene position: 859545-861164 (Clockwise)
Preceding gene: 94313194
Following gene: 94313196
Centisome position: 33.31
GC content: 64.94
Gene sequence:
>1620_bases ATGAACCCATCCGACAACCTGATCGAAGCTCAGGAGTTGTCGCCGCTGGAGGTGCTACGGCAATACCGCGCGCACGACTT CACGCTGTCAGCGTTCCTGGCAGCACGCGTGGCACAGCATCCCGACAAGCCTGCGTTGCTGTTCGAGGGAGAGACATGGA GCTATGGCGAACTGGCTGCGCGCATCGCACGCACCGCGGCGTGGCTCAGCCACGATATGCACATCCGCGCCGGCGACCGT GTTGGTGTGCTGTCCGCCAACCATCCGTCCACCGTCGTGCTGATGTTCGCGCTGGCGCAGCTTGGCGCCACGCTGGTTCC GGCCAATCCCGACTACCGGCTGGATGAGGCGTTGTACGTCTTCGAGCATGCGCAGATCTGTGGGCTGATCTGTTCGCCGA ACACGCTCGACACGGCCGCGGCCGTCGTGTCGCAGCTTGGCGGCGATGTCTGGCTGCGTGCCAATGAGGCCGGCGGGCAC GGACAGGCACTGACCGGCGAATCGGAAGCCGATACCGAACTGCGGGCCGAGGCCGCCTCTACGGCGATGATTATCTATAC GTCGGGCACGACCGGCTTTCCCAAAGGCGCCATGCACGGCCAGCGTGGCTACGTGCTGACGGCCGAAGCTTTTGTCGGCC GCATGCACCTGCAGCCGAACGAACGCGTGATGTGCGTGATGCCGCTGTTCCACATCAACGCGCTGATGTACTCGGTAGGC GGCGCGCTGGCTTGCGGTGGCTGCCTGGTGCTGGTGCGCCGGTTCTCGGCGTCGTCGTTCTGGCGCTTAGCGGCGGAAAG CGGCGCGACGGAGGTCAACTTGGTCGCGGCAGCAGGTAGCATCCTCGCGCGGCGTCCGCGCGAGGAGTTCGTGCCCGGCC ACCGGATCTCCAAGATGTTTATCGCGCCGCAGACGAGCGAGATGGTGAGCGCAATGCGCCATGAGTTTCACGTGGCGCGA CTGATTGAATGCTATGGCATGACGGAGATCCCAGGAGTCATTGCCAACCCGTTCCATGGCCCACACAAGCTGGGCACGAT GGGCCTGATCTCACGCCACCCCGATCCAGATATCTCCCCGCCTCAGGCGCGCATTATTGGCGAAGACGGGAAGGATGTCG CCGCCGGTGATTCGGGCGAACTGCTGATCCGCACACCGACCCTAATGCAGGGCTACTACCGCGACACCGCTCAGACCGAC GCGGCGTTCCGCGACGGGTGGTTCGCCACCGGCGACCTGGTGCGCCAGGACGACGACGGCTACTACGTTTTCGTCGCACG CAAGAAGGACGTGATCCGTCGCAAGGGAGAAAACGTTTCGGGCGCGGAACTCGATCGCGTGTTTGGTGAGCATCCTGCGG TGGAGGAGGCCGCGGCAATCGGCGTACCGGCCGAGCTTGGGGAAGAAGAGATCCTGCTGGCCGTGCAACTGAGAGCGGGC TGGGAAGTCGGCGCGACCGAGTTGGTCGACTGGGCGCGCGACCGCCTGGCCGCGCACAAGCTGCCGCGCTTCGTCGTGAA GGTCGATCAAATTCCACATACCCCCACGCACAAGCCGGCCAAGCACCGGCTGAAGGCAGACGCGTGCCTGCTGGCGCGCG CGACGGATGTTGCCGGCTGA
Upstream 100 bases:
>100_bases TCGCGCACCTGCAGGAGGAGACGCGTCTGCCAATAGGCTTCGCGCTGGCTGATGCGGCTGAACATGCCGTTGCCTATATC GGGCCGGAGGTCTGCACAGC
Downstream 100 bases:
>100_bases GCGGAACCCGTATGACGGCTGCCACAAGCCGCAACCCTGACAAAAATGGAGACAACGATGGACCAGACCAACAACCCCAC GCTATCGCGAGCATTGGCCG
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 539; Mature: 539
Protein sequence:
>539_residues MNPSDNLIEAQELSPLEVLRQYRAHDFTLSAFLAARVAQHPDKPALLFEGETWSYGELAARIARTAAWLSHDMHIRAGDR VGVLSANHPSTVVLMFALAQLGATLVPANPDYRLDEALYVFEHAQICGLICSPNTLDTAAAVVSQLGGDVWLRANEAGGH GQALTGESEADTELRAEAASTAMIIYTSGTTGFPKGAMHGQRGYVLTAEAFVGRMHLQPNERVMCVMPLFHINALMYSVG GALACGGCLVLVRRFSASSFWRLAAESGATEVNLVAAAGSILARRPREEFVPGHRISKMFIAPQTSEMVSAMRHEFHVAR LIECYGMTEIPGVIANPFHGPHKLGTMGLISRHPDPDISPPQARIIGEDGKDVAAGDSGELLIRTPTLMQGYYRDTAQTD AAFRDGWFATGDLVRQDDDGYYVFVARKKDVIRRKGENVSGAELDRVFGEHPAVEEAAAIGVPAELGEEEILLAVQLRAG WEVGATELVDWARDRLAAHKLPRFVVKVDQIPHTPTHKPAKHRLKADACLLARATDVAG
Sequences:
>Translated_539_residues MNPSDNLIEAQELSPLEVLRQYRAHDFTLSAFLAARVAQHPDKPALLFEGETWSYGELAARIARTAAWLSHDMHIRAGDR VGVLSANHPSTVVLMFALAQLGATLVPANPDYRLDEALYVFEHAQICGLICSPNTLDTAAAVVSQLGGDVWLRANEAGGH GQALTGESEADTELRAEAASTAMIIYTSGTTGFPKGAMHGQRGYVLTAEAFVGRMHLQPNERVMCVMPLFHINALMYSVG GALACGGCLVLVRRFSASSFWRLAAESGATEVNLVAAAGSILARRPREEFVPGHRISKMFIAPQTSEMVSAMRHEFHVAR LIECYGMTEIPGVIANPFHGPHKLGTMGLISRHPDPDISPPQARIIGEDGKDVAAGDSGELLIRTPTLMQGYYRDTAQTD AAFRDGWFATGDLVRQDDDGYYVFVARKKDVIRRKGENVSGAELDRVFGEHPAVEEAAAIGVPAELGEEEILLAVQLRAG WEVGATELVDWARDRLAAHKLPRFVVKVDQIPHTPTHKPAKHRLKADACLLARATDVAG >Mature_539_residues MNPSDNLIEAQELSPLEVLRQYRAHDFTLSAFLAARVAQHPDKPALLFEGETWSYGELAARIARTAAWLSHDMHIRAGDR VGVLSANHPSTVVLMFALAQLGATLVPANPDYRLDEALYVFEHAQICGLICSPNTLDTAAAVVSQLGGDVWLRANEAGGH GQALTGESEADTELRAEAASTAMIIYTSGTTGFPKGAMHGQRGYVLTAEAFVGRMHLQPNERVMCVMPLFHINALMYSVG GALACGGCLVLVRRFSASSFWRLAAESGATEVNLVAAAGSILARRPREEFVPGHRISKMFIAPQTSEMVSAMRHEFHVAR LIECYGMTEIPGVIANPFHGPHKLGTMGLISRHPDPDISPPQARIIGEDGKDVAAGDSGELLIRTPTLMQGYYRDTAQTD AAFRDGWFATGDLVRQDDDGYYVFVARKKDVIRRKGENVSGAELDRVFGEHPAVEEAAAIGVPAELGEEEILLAVQLRAG WEVGATELVDWARDRLAAHKLPRFVVKVDQIPHTPTHKPAKHRLKADACLLARATDVAG
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI187761345, Length=543, Percent_Identity=27.0718232044199, Blast_Score=152, Evalue=8e-37, Organism=Homo sapiens, GI187761343, Length=543, Percent_Identity=27.0718232044199, Blast_Score=152, Evalue=8e-37, Organism=Homo sapiens, GI227499619, Length=534, Percent_Identity=27.9026217228464, Blast_Score=145, Evalue=8e-35, Organism=Homo sapiens, GI156151445, Length=550, Percent_Identity=26, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI40807357, Length=552, Percent_Identity=24.4565217391304, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI122937307, Length=526, Percent_Identity=24.1444866920152, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI42544132, Length=522, Percent_Identity=22.9885057471264, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI38524616, Length=545, Percent_Identity=24.954128440367, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI38505220, Length=531, Percent_Identity=22.9755178907721, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI13325057, Length=362, Percent_Identity=27.3480662983425, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI13236579, Length=490, Percent_Identity=23.8775510204082, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI58082049, Length=506, Percent_Identity=24.3083003952569, Blast_Score=96, Evalue=9e-20, Organism=Homo sapiens, GI157311624, Length=520, Percent_Identity=22.6923076923077, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI157311622, Length=520, Percent_Identity=22.6923076923077, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI115511026, Length=497, Percent_Identity=22.7364185110664, Blast_Score=90, Evalue=6e-18, Organism=Homo sapiens, GI8923896, Length=567, Percent_Identity=22.7513227513227, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI253970489, Length=379, Percent_Identity=24.5382585751979, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI227499621, Length=179, Percent_Identity=32.4022346368715, Blast_Score=70, Evalue=4e-12, Organism=Escherichia coli, GI221142682, Length=489, Percent_Identity=27.19836400818, Blast_Score=165, Evalue=9e-42, Organism=Escherichia coli, GI1788107, Length=540, Percent_Identity=25, Blast_Score=152, Evalue=4e-38, Organism=Escherichia coli, GI145693145, Length=528, Percent_Identity=23.6742424242424, Blast_Score=133, Evalue=4e-32, Organism=Escherichia coli, GI1790505, Length=561, Percent_Identity=23.1729055258467, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1786810, Length=551, Percent_Identity=24.8638838475499, Blast_Score=93, Evalue=5e-20, Organism=Escherichia coli, GI1786801, Length=471, Percent_Identity=24.203821656051, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI32563687, Length=498, Percent_Identity=25.9036144578313, Blast_Score=148, Evalue=6e-36, Organism=Caenorhabditis elegans, GI71994694, Length=553, Percent_Identity=27.4864376130199, Blast_Score=140, Evalue=2e-33, Organism=Caenorhabditis elegans, GI71994703, Length=553, Percent_Identity=27.4864376130199, Blast_Score=140, Evalue=2e-33, Organism=Caenorhabditis elegans, GI71994690, Length=553, Percent_Identity=27.4864376130199, Blast_Score=140, Evalue=2e-33, Organism=Caenorhabditis elegans, GI17558820, Length=503, Percent_Identity=26.2425447316103, Blast_Score=139, Evalue=5e-33, Organism=Caenorhabditis elegans, GI115534440, Length=532, Percent_Identity=26.1278195488722, Blast_Score=125, Evalue=6e-29, Organism=Caenorhabditis elegans, GI17551278, Length=557, Percent_Identity=24.7755834829443, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560308, Length=552, Percent_Identity=24.6376811594203, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17538037, Length=540, Percent_Identity=22.962962962963, Blast_Score=99, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17557194, Length=535, Percent_Identity=22.6168224299065, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17559526, Length=360, Percent_Identity=25.2777777777778, Blast_Score=97, Evalue=3e-20, Organism=Caenorhabditis elegans, GI71985884, Length=325, Percent_Identity=21.8461538461538, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17531443, Length=537, Percent_Identity=20.2979515828678, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17560140, Length=343, Percent_Identity=21.5743440233236, Blast_Score=69, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6319515, Length=546, Percent_Identity=25.6410256410256, Blast_Score=147, Evalue=4e-36, Organism=Saccharomyces cerevisiae, GI6319699, Length=353, Percent_Identity=29.4617563739377, Blast_Score=136, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6319264, Length=388, Percent_Identity=23.1958762886598, Blast_Score=77, Evalue=6e-15, Organism=Drosophila melanogaster, GI18859661, Length=494, Percent_Identity=26.7206477732794, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI24581924, Length=520, Percent_Identity=26.7307692307692, Blast_Score=142, Evalue=4e-34, Organism=Drosophila melanogaster, GI21355181, Length=526, Percent_Identity=25.0950570342205, Blast_Score=138, Evalue=1e-32, Organism=Drosophila melanogaster, GI24583465, Length=495, Percent_Identity=24.4444444444444, Blast_Score=118, Evalue=9e-27, Organism=Drosophila melanogaster, GI24583463, Length=495, Percent_Identity=24.4444444444444, Blast_Score=118, Evalue=9e-27, Organism=Drosophila melanogaster, GI281364798, Length=495, Percent_Identity=24.4444444444444, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI28573631, Length=580, Percent_Identity=23.1034482758621, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI20130353, Length=580, Percent_Identity=23.1034482758621, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI24656500, Length=531, Percent_Identity=23.9171374764595, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI45550496, Length=565, Percent_Identity=23.3628318584071, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI45552801, Length=565, Percent_Identity=23.3628318584071, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24648253, Length=538, Percent_Identity=20.817843866171, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI21356441, Length=524, Percent_Identity=21.9465648854962, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI24648255, Length=538, Percent_Identity=20.631970260223, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI62472339, Length=568, Percent_Identity=22.1830985915493, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI21356947, Length=299, Percent_Identity=26.7558528428094, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24667955, Length=547, Percent_Identity=22.1206581352834, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI19922652, Length=504, Percent_Identity=21.031746031746, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI24667959, Length=378, Percent_Identity=23.5449735449735, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI24648260, Length=518, Percent_Identity=21.6216216216216, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI20130357, Length=360, Percent_Identity=23.8888888888889, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI281365686, Length=352, Percent_Identity=22.1590909090909, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI24653035, Length=176, Percent_Identity=30.1136363636364, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI161076582, Length=213, Percent_Identity=27.6995305164319, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI21358303, Length=358, Percent_Identity=23.1843575418994, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 58459; Mature: 58459
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPSDNLIEAQELSPLEVLRQYRAHDFTLSAFLAARVAQHPDKPALLFEGETWSYGELAA CCCCCCCEEHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH RIARTAAWLSHDMHIRAGDRVGVLSANHPSTVVLMFALAQLGATLVPANPDYRLDEALYV HHHHHHHHHHCCEEEECCCEEEEEECCCCHHHHHHHHHHHHCCEEECCCCCCCHHHHHHH FEHAQICGLICSPNTLDTAAAVVSQLGGDVWLRANEAGGHGQALTGESEADTELRAEAAS HHHHHHEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCCHHHHHHHCC TAMIIYTSGTTGFPKGAMHGQRGYVLTAEAFVGRMHLQPNERVMCVMPLFHINALMYSVG EEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHCEEECCCCCCEEEEEHHHHHHHHHHHHC GALACGGCLVLVRRFSASSFWRLAAESGATEVNLVAAAGSILARRPREEFVPGHRISKMF CHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHCCCCCCCEEEE IAPQTSEMVSAMRHEFHVARLIECYGMTEIPGVIANPFHGPHKLGTMGLISRHPDPDISP ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHCCCHHHHCCCCCCCCCC PQARIIGEDGKDVAAGDSGELLIRTPTLMQGYYRDTAQTDAAFRDGWFATGDLVRQDDDG CCEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHCCHHCCHHHHCCCEECCCCEEECCCC YYVFVARKKDVIRRKGENVSGAELDRVFGEHPAVEEAAAIGVPAELGEEEILLAVQLRAG EEEEEECCHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHCCCCHHCCCCEEEEEEEEECC WEVGATELVDWARDRLAAHKLPRFVVKVDQIPHTPTHKPAKHRLKADACLLARATDVAG CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHEEEHHHCCCC >Mature Secondary Structure MNPSDNLIEAQELSPLEVLRQYRAHDFTLSAFLAARVAQHPDKPALLFEGETWSYGELAA CCCCCCCEEHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH RIARTAAWLSHDMHIRAGDRVGVLSANHPSTVVLMFALAQLGATLVPANPDYRLDEALYV HHHHHHHHHHCCEEEECCCEEEEEECCCCHHHHHHHHHHHHCCEEECCCCCCCHHHHHHH FEHAQICGLICSPNTLDTAAAVVSQLGGDVWLRANEAGGHGQALTGESEADTELRAEAAS HHHHHHEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCCHHHHHHHCC TAMIIYTSGTTGFPKGAMHGQRGYVLTAEAFVGRMHLQPNERVMCVMPLFHINALMYSVG EEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHCEEECCCCCCEEEEEHHHHHHHHHHHHC GALACGGCLVLVRRFSASSFWRLAAESGATEVNLVAAAGSILARRPREEFVPGHRISKMF CHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHCCCCCCCEEEE IAPQTSEMVSAMRHEFHVARLIECYGMTEIPGVIANPFHGPHKLGTMGLISRHPDPDISP ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHCCCHHHHCCCCCCCCCC PQARIIGEDGKDVAAGDSGELLIRTPTLMQGYYRDTAQTDAAFRDGWFATGDLVRQDDDG CCEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHCCHHCCHHHHCCCEECCCCEEECCCC YYVFVARKKDVIRRKGENVSGAELDRVFGEHPAVEEAAAIGVPAELGEEEILLAVQLRAG EEEEEECCHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHCCCCHHCCCCEEEEEEEEECC WEVGATELVDWARDRLAAHKLPRFVVKVDQIPHTPTHKPAKHRLKADACLLARATDVAG CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHEEEHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]