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The map label for this gene is pecT [H]

Identifier: 94313107

GI number: 94313107

Start: 765094

End: 765960

Strand: Reverse

Name: pecT [H]

Synonym: Rmet_4180

Alternate gene names: 94313107

Gene position: 765960-765094 (Counterclockwise)

Preceding gene: 94313109

Following gene: 94313106

Centisome position: 29.69

GC content: 64.01

Gene sequence:

>867_bases
ATGAAAAGGCACCCGCTCGACTTGGATGCCGTCCAGGCTTTCGTGCGCATTGCGGACCTTGGCAGCTTTACGCGCGCGGC
TGAAGCCATGCGGACGACGCAGGCCGCTGTCAGCTTGAAGCTGCAACGGCTCGAACAGAGGCTCGATTGTCGGCTGGTCG
AGCGGACCCCCAGGTATGTGGCGCTGTCGGCGCAGGGCGTAGCCTTCCTTGAACACGCCCGCGAACTCCTGGAGGTACAC
GAACGCGCGCTCGCCGGAATGACAGGGAGACGGCAGCGTCTTGTCATCGGTATCAGTGACCACGTTGCGGGACCGGAACT
CCCCGCGCTGATCGCGCGCATGAACGCACAAAACCCCCAACTGTTGATCGAGATCCGGATTGGCTCGTCTGGCGACCTGC
TGCAAAGCTTCGACCGGCGGGAACTCGATACGGTGATCGTCCGCTTACACGTTGGTCGAAGCGACGGCGAATTTCTGACC
GACGAGAAGTTCGGCTGGTTTGCGGCGCCGAGCTGGAAGCATCGCGCCGGCGATCCGCTGCCGCTTGCCACACTGGCCGA
ACCTTGTGGCGTGCGTGCGATGGCCGGCCAGTTTCTCGATGCGGCCGGAGTGCCCTGGACAGAAGTTTTCGTTGGCGGCG
GCGTTGCAGCAGTCGCTGCAGCCGTCGTGGCCGGGCTTGGCGTGGCGGCATTGGCTCCACGCATGCTGCCATGGGGCGCA
GTTGACGTAGGCTCCAAGCTCGGGCTTCCTGACTTGCCACGCTTGCCAGTTCTGCTTCACTCGCGAGTCAGCGACAGCCG
TTCGCGCGAGGCGCTTGCCGCGCTTGCCGCCGCCTTCAAGAGTGCAGTGCGGGGTAGAAACAACTAG

Upstream 100 bases:

>100_bases
GCATGGTTGAGTCCTTTCCGTTGTGGCCTGACTGAACATTAAGAGCCATCTGCTATATTGAAAAGCCATGATGACCCAAT
ATCAGTAATAACAATTGGAA

Downstream 100 bases:

>100_bases
TCGGTCACACACTGGAATGGCTGCCAGCGGTATTGGTTTGCCAATTGGCAACGACCTAGGTGGCTGTCTCGAACATCTCA
AACTGGCAGACCTCGGCCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MKRHPLDLDAVQAFVRIADLGSFTRAAEAMRTTQAAVSLKLQRLEQRLDCRLVERTPRYVALSAQGVAFLEHARELLEVH
ERALAGMTGRRQRLVIGISDHVAGPELPALIARMNAQNPQLLIEIRIGSSGDLLQSFDRRELDTVIVRLHVGRSDGEFLT
DEKFGWFAAPSWKHRAGDPLPLATLAEPCGVRAMAGQFLDAAGVPWTEVFVGGGVAAVAAAVVAGLGVAALAPRMLPWGA
VDVGSKLGLPDLPRLPVLLHSRVSDSRSREALAALAAAFKSAVRGRNN

Sequences:

>Translated_288_residues
MKRHPLDLDAVQAFVRIADLGSFTRAAEAMRTTQAAVSLKLQRLEQRLDCRLVERTPRYVALSAQGVAFLEHARELLEVH
ERALAGMTGRRQRLVIGISDHVAGPELPALIARMNAQNPQLLIEIRIGSSGDLLQSFDRRELDTVIVRLHVGRSDGEFLT
DEKFGWFAAPSWKHRAGDPLPLATLAEPCGVRAMAGQFLDAAGVPWTEVFVGGGVAAVAAAVVAGLGVAALAPRMLPWGA
VDVGSKLGLPDLPRLPVLLHSRVSDSRSREALAALAAAFKSAVRGRNN
>Mature_288_residues
MKRHPLDLDAVQAFVRIADLGSFTRAAEAMRTTQAAVSLKLQRLEQRLDCRLVERTPRYVALSAQGVAFLEHARELLEVH
ERALAGMTGRRQRLVIGISDHVAGPELPALIARMNAQNPQLLIEIRIGSSGDLLQSFDRRELDTVIVRLHVGRSDGEFLT
DEKFGWFAAPSWKHRAGDPLPLATLAEPCGVRAMAGQFLDAAGVPWTEVFVGGGVAAVAAAVVAGLGVAALAPRMLPWGA
VDVGSKLGLPDLPRLPVLLHSRVSDSRSREALAALAAAFKSAVRGRNN

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=275, Percent_Identity=32.3636363636364, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787601, Length=173, Percent_Identity=28.9017341040462, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=264, Percent_Identity=26.1363636363636, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31003; Mature: 31003

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRHPLDLDAVQAFVRIADLGSFTRAAEAMRTTQAAVSLKLQRLEQRLDCRLVERTPRYV
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
ALSAQGVAFLEHARELLEVHERALAGMTGRRQRLVIGISDHVAGPELPALIARMNAQNPQ
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCE
LLIEIRIGSSGDLLQSFDRRELDTVIVRLHVGRSDGEFLTDEKFGWFAAPSWKHRAGDPL
EEEEEEECCCCHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCC
PLATLAEPCGVRAMAGQFLDAAGVPWTEVFVGGGVAAVAAAVVAGLGVAALAPRMLPWGA
CHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
VDVGSKLGLPDLPRLPVLLHSRVSDSRSREALAALAAAFKSAVRGRNN
CCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKRHPLDLDAVQAFVRIADLGSFTRAAEAMRTTQAAVSLKLQRLEQRLDCRLVERTPRYV
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
ALSAQGVAFLEHARELLEVHERALAGMTGRRQRLVIGISDHVAGPELPALIARMNAQNPQ
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCE
LLIEIRIGSSGDLLQSFDRRELDTVIVRLHVGRSDGEFLTDEKFGWFAAPSWKHRAGDPL
EEEEEEECCCCHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCC
PLATLAEPCGVRAMAGQFLDAAGVPWTEVFVGGGVAAVAAAVVAGLGVAALAPRMLPWGA
CHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
VDVGSKLGLPDLPRLPVLLHSRVSDSRSREALAALAAAFKSAVRGRNN
CCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]