Click here to switch to the map view.

The map label for this gene is napD [C]

Identifier: 94312992

GI number: 94312992

Start: 630338

End: 630667

Strand: Reverse

Name: napD [C]

Synonym: Rmet_4064

Alternate gene names: 94312992

Gene position: 630667-630338 (Counterclockwise)

Preceding gene: 94312993

Following gene: 94312991

Centisome position: 24.44

GC content: 62.42

Gene sequence:

>330_bases
ATGCCAGCATCAGGAGTGTCGATTCCCATCGTGCCCGTGCCGGCCGGCGAAGAGTGGCATATCGCCGGCATCATGGTGTA
CGCGAACCCGGAAAAGCTCGATGCCGTCTGCTCGGCCATCGACGCCATGACTGGCATGGAGATCCATGCGATCAGTGACG
CCGGCAAGATCGTCGTCACCGCGGAAGCACCCAGCTCGCGCGCCATCGCCGCGCAACTCACCTGTCTGCATCAACTCGAA
GGCGTCTTTTCCGCCACGCTGGTCTACCAGCACAACGAAGATGCCGCCGCCATGAACGAGGAGATCTCCGATGCCACTCA
CGCGCCGTGA

Upstream 100 bases:

>100_bases
ATTGAACATTGCCATGCAGGATTGGCCTTTGGTCCAATGCCCGTGCCATAACAAGGCTGCGAAGCTAGCCTGAGCAGCCG
AAAAGCTGGAGTCCCCCGTC

Downstream 100 bases:

>100_bases
TTTCATCAAGCAGACAGCCATCGCCGCCACGGCCTCGGTGGCGGGCGTCTCGCTGCCGACGGATGCGGCCAATTTCGTGA
CGGACAGCGAAGTCACGAAA

Product: putative periplasmic nitrate reductase

Products: reduced acceptor; NO3- [C]

Alternate protein names: NapD Protein; Periplasmic Nitrate Reductase Accessory Protein; Periplasmic Nitrate Reductase; Periplasmic Nitrate Reductase NapD

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MPASGVSIPIVPVPAGEEWHIAGIMVYANPEKLDAVCSAIDAMTGMEIHAISDAGKIVVTAEAPSSRAIAAQLTCLHQLE
GVFSATLVYQHNEDAAAMNEEISDATHAP

Sequences:

>Translated_109_residues
MPASGVSIPIVPVPAGEEWHIAGIMVYANPEKLDAVCSAIDAMTGMEIHAISDAGKIVVTAEAPSSRAIAAQLTCLHQLE
GVFSATLVYQHNEDAAAMNEEISDATHAP
>Mature_108_residues
PASGVSIPIVPVPAGEEWHIAGIMVYANPEKLDAVCSAIDAMTGMEIHAISDAGKIVVTAEAPSSRAIAAQLTCLHQLEG
VFSATLVYQHNEDAAAMNEEISDATHAP

Specific function: Plays A Role In The Correct Assembly Of Subunits Of The Periplasmic Napab Enzyme. [C]

COG id: COG3062

COG function: function code P; Uncharacterized protein involved in formation of periplasmic nitrate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11338; Mature: 11207

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASGVSIPIVPVPAGEEWHIAGIMVYANPEKLDAVCSAIDAMTGMEIHAISDAGKIVVT
CCCCCCEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCEEEE
AEAPSSRAIAAQLTCLHQLEGVFSATLVYQHNEDAAAMNEEISDATHAP
ECCCCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHCCCCCCCC
>Mature Secondary Structure 
PASGVSIPIVPVPAGEEWHIAGIMVYANPEKLDAVCSAIDAMTGMEIHAISDAGKIVVT
CCCCCEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCEEEE
AEAPSSRAIAAQLTCLHQLEGVFSATLVYQHNEDAAAMNEEISDATHAP
ECCCCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA