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The map label for this gene is ydhP [H]

Identifier: 94312953

GI number: 94312953

Start: 594026

End: 595174

Strand: Direct

Name: ydhP [H]

Synonym: Rmet_4025

Alternate gene names: 94312953

Gene position: 594026-595174 (Clockwise)

Preceding gene: 94312950

Following gene: 94312955

Centisome position: 23.02

GC content: 67.19

Gene sequence:

>1149_bases
TTGCTGGCGCTAGGCGTTGGCAGCTTTGGCATTGGCACCGGCGAGTTCGTCATCATGGGCTTGCTGCCCGACGCCGCGCG
CGATCTGGCAATCACCATTCCCGAGGCCGGCCACCTGATCAGCGCGTACGCGCTGGGTGTGGTCATCGGCGCGCCCTTGC
TGGCCGTGCTGGGCGCGCGCTGGCCACGCCGTAACCTGCTGATTGCGCTGATGAGCGTCTTCGCCCTGGGCAACTTCGCC
AGCGCGCTGGCGCCGGGGTATCTGCCGATGCTCGCCGTGCGCCTGCTCACAGGATTTCCGCATGGCACCTACTTCGGCGT
GGCCGCATTGGTGGCGGCGAGTCTGGTGGCGCGCGAGCGCCGTGCGCAGGCCGTCGGCCTGGTCATGCTCGGGCTGACCG
TGGCGACCCTTGTGGGAGTGCCGATCGCTGCCGGCATTGGCACGTGGCTGGGTTGGCGCACCGCGTTCGTGATCGTGGGC
GCCATCGGCGCGCTCACGGCTTTGCTGGTGTGGCGCTGGGTGCCGTTTGTGCCCGCCGATCGCCATGCAAGCCCATTGCG
CGAACTGTCCGCGCTGGCGCGCAAGCAGGTCTGGTTCACCCTCGGCATTGGTGCCATCGGCTTTGGTGGCATGTTCGCGG
TGTTCAGCTATGTCAAGCCGACGATGCTCGAGGTGGCGCATATGCCCGCCAGCGGTATTCCCATCGTGCTGGCGTTGTTC
GGCGTCGGCATGGTGGCCGGCAATCTGGCCGGCGCGAAGCTGGCGGACAAGGCATTGATGCCAACCATCGGTGGTGTGCT
GCTCTGGTCCGCGCTGGTGCTGGGCGCCTTCGTGTACACCGCGCCACACCCGTGGCTTGCTTCGCTCAATGTGATGCTGG
TAGGCACCGCCGTGGCGCTGGGCCCGCCGTTGCAGATACGCCTGATGGACGTGGCCGGAGACGCCCAGACGCTGGCCGCC
GCGCTCAATCACTCGGCGTTCAATATGGCGAACGCGCTCGGCGCATGGCTTGGTGGCGTGACGATCGCCGCCGGTCTCGG
CTGGACCTCAACCGGCTGGGTCGGGATGCTGCTGGCGTTGGCCGGTATGGTCGTGTTTGGGTGGTCACTGATGAGTGCCT
CTCGCCGTGACATCACCGTGACAGCCTGA

Upstream 100 bases:

>100_bases
AAACTTCGACAGCGTTCCCGATCTCACCCGTTCGTCCCCGAATTCATCTACCGAAGGCGATGCCGCCACGGCCCGTGATC
GCGCGGCTGACCGCCGTGCC

Downstream 100 bases:

>100_bases
GCAAGACCCCAAGGCGCGGGACCGGAGGCAGGATCCCGCGCCGGGCTCAGGACGGCCAGAAGAATCAGAAGATCGAGTCG
TCGTTGCGGTAGTCGTCGTC

Product: putative transmembrane transporter of the major facilitator superfamily MFS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLALGVGSFGIGTGEFVIMGLLPDAARDLAITIPEAGHLISAYALGVVIGAPLLAVLGARWPRRNLLIALMSVFALGNFA
SALAPGYLPMLAVRLLTGFPHGTYFGVAALVAASLVARERRAQAVGLVMLGLTVATLVGVPIAAGIGTWLGWRTAFVIVG
AIGALTALLVWRWVPFVPADRHASPLRELSALARKQVWFTLGIGAIGFGGMFAVFSYVKPTMLEVAHMPASGIPIVLALF
GVGMVAGNLAGAKLADKALMPTIGGVLLWSALVLGAFVYTAPHPWLASLNVMLVGTAVALGPPLQIRLMDVAGDAQTLAA
ALNHSAFNMANALGAWLGGVTIAAGLGWTSTGWVGMLLALAGMVVFGWSLMSASRRDITVTA

Sequences:

>Translated_382_residues
MLALGVGSFGIGTGEFVIMGLLPDAARDLAITIPEAGHLISAYALGVVIGAPLLAVLGARWPRRNLLIALMSVFALGNFA
SALAPGYLPMLAVRLLTGFPHGTYFGVAALVAASLVARERRAQAVGLVMLGLTVATLVGVPIAAGIGTWLGWRTAFVIVG
AIGALTALLVWRWVPFVPADRHASPLRELSALARKQVWFTLGIGAIGFGGMFAVFSYVKPTMLEVAHMPASGIPIVLALF
GVGMVAGNLAGAKLADKALMPTIGGVLLWSALVLGAFVYTAPHPWLASLNVMLVGTAVALGPPLQIRLMDVAGDAQTLAA
ALNHSAFNMANALGAWLGGVTIAAGLGWTSTGWVGMLLALAGMVVFGWSLMSASRRDITVTA
>Mature_382_residues
MLALGVGSFGIGTGEFVIMGLLPDAARDLAITIPEAGHLISAYALGVVIGAPLLAVLGARWPRRNLLIALMSVFALGNFA
SALAPGYLPMLAVRLLTGFPHGTYFGVAALVAASLVARERRAQAVGLVMLGLTVATLVGVPIAAGIGTWLGWRTAFVIVG
AIGALTALLVWRWVPFVPADRHASPLRELSALARKQVWFTLGIGAIGFGGMFAVFSYVKPTMLEVAHMPASGIPIVLALF
GVGMVAGNLAGAKLADKALMPTIGGVLLWSALVLGAFVYTAPHPWLASLNVMLVGTAVALGPPLQIRLMDVAGDAQTLAA
ALNHSAFNMANALGAWLGGVTIAAGLGWTSTGWVGMLLALAGMVVFGWSLMSASRRDITVTA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=383, Percent_Identity=40.2088772845953, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1786595, Length=367, Percent_Identity=33.7874659400545, Blast_Score=185, Evalue=5e-48,
Organism=Escherichia coli, GI1787808, Length=386, Percent_Identity=26.1658031088083, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI145693198, Length=263, Percent_Identity=22.4334600760456, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 39319; Mature: 39319

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALGVGSFGIGTGEFVIMGLLPDAARDLAITIPEAGHLISAYALGVVIGAPLLAVLGAR
CEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
WPRRNLLIALMSVFALGNFASALAPGYLPMLAVRLLTGFPHGTYFGVAALVAASLVARER
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RAQAVGLVMLGLTVATLVGVPIAAGIGTWLGWRTAFVIVGAIGALTALLVWRWVPFVPAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RHASPLRELSALARKQVWFTLGIGAIGFGGMFAVFSYVKPTMLEVAHMPASGIPIVLALF
CCCHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GVGMVAGNLAGAKLADKALMPTIGGVLLWSALVLGAFVYTAPHPWLASLNVMLVGTAVAL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEHHHHC
GPPLQIRLMDVAGDAQTLAAALNHSAFNMANALGAWLGGVTIAAGLGWTSTGWVGMLLAL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
AGMVVFGWSLMSASRRDITVTA
HHHHHHHHHHHCCCCCCEEEEC
>Mature Secondary Structure
MLALGVGSFGIGTGEFVIMGLLPDAARDLAITIPEAGHLISAYALGVVIGAPLLAVLGAR
CEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
WPRRNLLIALMSVFALGNFASALAPGYLPMLAVRLLTGFPHGTYFGVAALVAASLVARER
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RAQAVGLVMLGLTVATLVGVPIAAGIGTWLGWRTAFVIVGAIGALTALLVWRWVPFVPAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RHASPLRELSALARKQVWFTLGIGAIGFGGMFAVFSYVKPTMLEVAHMPASGIPIVLALF
CCCHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GVGMVAGNLAGAKLADKALMPTIGGVLLWSALVLGAFVYTAPHPWLASLNVMLVGTAVAL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEHHHHC
GPPLQIRLMDVAGDAQTLAAALNHSAFNMANALGAWLGGVTIAAGLGWTSTGWVGMLLAL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
AGMVVFGWSLMSASRRDITVTA
HHHHHHHHHHHCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]