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The map label for this gene is ycgF [C]

Identifier: 94312917

GI number: 94312917

Start: 558011

End: 558454

Strand: Reverse

Name: ycgF [C]

Synonym: Rmet_3989

Alternate gene names: 94312917

Gene position: 558454-558011 (Counterclockwise)

Preceding gene: 94312918

Following gene: 94312915

Centisome position: 21.64

GC content: 65.32

Gene sequence:

>444_bases
ATGCTAGTCCGCCTGCTCTACGCCAGCCGCGCCAGACAACCGCTTGACGCCGATGTGCTGGACGCCATCCTCGACACCAG
CCTGGAACAGAACCTACGTCACGGCATCACCGGCGTGCTGTGCCACAGCAACACCGTCTTCCTCCAGGCACTGGAAGGTG
ATCGGGAAGCCGTCTCTCGGCTTTTCCTGAATATCGGCCGCGATGATCGCCACCACCACGTCGTGCTGCTGAGCTACGAA
GAGATCGCCGAGCGGGCCTTCGCCGGCTGGTCGATGGGACGCGTCAACGCGGGCCGGATCAATGCCGCGACGCTGCTCAA
GTACTCCGCGCAAGGCGAACTCGACCCCTGCCGCATGCCCGGTGCGGCATCGCTGGCACTCCTCACGGAACTGATCGCCG
GAGCGTCGATCATCGGCCGCGGTGGCGAGCGAGGACGCCACTGA

Upstream 100 bases:

>100_bases
TCATGCGCGGCTCGTTCCTCAAGGACGACAAGCTGCGCCGTGAATTTCTCACCCTGCTGAATCTCAATCGCCGCTGACTC
GCTGCCCGGAGGGAACACCG

Downstream 100 bases:

>100_bases
CGACCGAAGGCGAGCCCGACCGCCACATGACCACGTAAATGCCTGCGCGTTTGCGTATTACTGTGTAGATACCTGCCCGA
ACAGGCCGCATTCCAGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: BLUF Domain Protein; Bluf Domain Protein; Sensors Of Blue-Light Using FAD; Blue-Light Sensor BluF Domain; Sensors Of Blue-Light Using FAD Family; Activator Of Photopigment And Puc Expression

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MLVRLLYASRARQPLDADVLDAILDTSLEQNLRHGITGVLCHSNTVFLQALEGDREAVSRLFLNIGRDDRHHHVVLLSYE
EIAERAFAGWSMGRVNAGRINAATLLKYSAQGELDPCRMPGAASLALLTELIAGASIIGRGGERGRH

Sequences:

>Translated_147_residues
MLVRLLYASRARQPLDADVLDAILDTSLEQNLRHGITGVLCHSNTVFLQALEGDREAVSRLFLNIGRDDRHHHVVLLSYE
EIAERAFAGWSMGRVNAGRINAATLLKYSAQGELDPCRMPGAASLALLTELIAGASIIGRGGERGRH
>Mature_147_residues
MLVRLLYASRARQPLDADVLDAILDTSLEQNLRHGITGVLCHSNTVFLQALEGDREAVSRLFLNIGRDDRHHHVVLLSYE
EIAERAFAGWSMGRVNAGRINAATLLKYSAQGELDPCRMPGAASLALLTELIAGASIIGRGGERGRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16042; Mature: 16042

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50925 BLUF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVRLLYASRARQPLDADVLDAILDTSLEQNLRHGITGVLCHSNTVFLQALEGDREAVSR
CEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHH
LFLNIGRDDRHHHVVLLSYEEIAERAFAGWSMGRVNAGRINAATLLKYSAQGELDPCRMP
HHHHCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCCC
GAASLALLTELIAGASIIGRGGERGRH
CHHHHHHHHHHHHCHHHCCCCCCCCCC
>Mature Secondary Structure
MLVRLLYASRARQPLDADVLDAILDTSLEQNLRHGITGVLCHSNTVFLQALEGDREAVSR
CEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHH
LFLNIGRDDRHHHVVLLSYEEIAERAFAGWSMGRVNAGRINAATLLKYSAQGELDPCRMP
HHHHCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCCC
GAASLALLTELIAGASIIGRGGERGRH
CHHHHHHHHHHHHCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA