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The map label for this gene is yggA [H]

Identifier: 94312790

GI number: 94312790

Start: 405507

End: 406157

Strand: Reverse

Name: yggA [H]

Synonym: Rmet_3862

Alternate gene names: 94312790

Gene position: 406157-405507 (Counterclockwise)

Preceding gene: 94312792

Following gene: 94312789

Centisome position: 15.74

GC content: 67.13

Gene sequence:

>651_bases
ATGATCACCGCCCTCCCCGCCCCATCTCCCGCTTTTTCCGTTTCGCTGCAAGGCATGGCCTTGAGCTTCGGACTGATCGT
CGCCATCGGCGCGCAGAATGCCTTCGTCCTGCGCCAAGGGTTGCGACGCGAGCACGTGGGCAGCGTGGTGCTGTTCTGCG
CAGTGGCAGACGCCTTGTTGATCACGGCGGGCGTCATGGGCATGGCCCAGGCCCTTGGCGAAAGCCCCGGCCTTGCCCGC
GCGTTAGCGGCAGTCGGCGCCATCTTCCTGGCGATATATGGGTGGCGGGCTCTGCGGCGCGCCCGGGAATCGCACCAGCT
AAGCACCCGCACCAGCGGCGAAGGCCTCGGCCGAAGCGCCGCGCTGGCTCAGGCGGCAGCCTTCACGCTGCTCAACCCGC
ACGTCTATCTGGATACGGTGCTGCTGGTTGGCAGCATCGGCGCCCAGCAACCGGCGGCACTACGCGGCTGGTTCGTGGCG
GGCGCAAGCTCCGCCAGCGTGCTCTGGTTCGGACTGCTGGGATTCGGCGCCCGCTGGCTGGCGCCGTGGTTCGCCCGCCC
CAAAGCCTGGCAGGCGCTGGATGCCCTGATTGGGATAACGATGCTGGCGTTGTCGTTGATGCTGGTGTGGCGAGTGGTTG
GCAATTTCTGA

Upstream 100 bases:

>100_bases
GCGGAAAGCGCGGCGTAGTCCAGCATCGGTTTAGCTCAACTTAATTAGATGAAGGAAAGATAGTTTGTCTTCATCCAGAA
AGACAGGCAAGCTCCCTCGG

Downstream 100 bases:

>100_bases
CTTTGCAGTCAATGTAAGGCTGGCTGTCCAACAGGGGGCTACCCCACACAACGCAACCCCGCCAACGGGGGAGCTTGCGC
CGCACAGGCAGTGCCTCTAT

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MITALPAPSPAFSVSLQGMALSFGLIVAIGAQNAFVLRQGLRREHVGSVVLFCAVADALLITAGVMGMAQALGESPGLAR
ALAAVGAIFLAIYGWRALRRARESHQLSTRTSGEGLGRSAALAQAAAFTLLNPHVYLDTVLLVGSIGAQQPAALRGWFVA
GASSASVLWFGLLGFGARWLAPWFARPKAWQALDALIGITMLALSLMLVWRVVGNF

Sequences:

>Translated_216_residues
MITALPAPSPAFSVSLQGMALSFGLIVAIGAQNAFVLRQGLRREHVGSVVLFCAVADALLITAGVMGMAQALGESPGLAR
ALAAVGAIFLAIYGWRALRRARESHQLSTRTSGEGLGRSAALAQAAAFTLLNPHVYLDTVLLVGSIGAQQPAALRGWFVA
GASSASVLWFGLLGFGARWLAPWFARPKAWQALDALIGITMLALSLMLVWRVVGNF
>Mature_216_residues
MITALPAPSPAFSVSLQGMALSFGLIVAIGAQNAFVLRQGLRREHVGSVVLFCAVADALLITAGVMGMAQALGESPGLAR
ALAAVGAIFLAIYGWRALRRARESHQLSTRTSGEGLGRSAALAQAAAFTLLNPHVYLDTVLLVGSIGAQQPAALRGWFVA
GASSASVLWFGLLGFGARWLAPWFARPKAWQALDALIGITMLALSLMLVWRVVGNF

Specific function: Unknown

COG id: COG1279

COG function: function code R; Lysine efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LysE/ArgO transporter (TC 2.A.75) family [H]

Homologues:

Organism=Escherichia coli, GI1789290, Length=197, Percent_Identity=39.0862944162437, Blast_Score=114, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004777
- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 22625; Mature: 22625

Theoretical pI: Translated: 11.95; Mature: 11.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITALPAPSPAFSVSLQGMALSFGLIVAIGAQNAFVLRQGLRREHVGSVVLFCAVADALL
CCCCCCCCCCCCEEEECHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITAGVMGMAQALGESPGLARALAAVGAIFLAIYGWRALRRARESHQLSTRTSGEGLGRSA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
ALAQAAAFTLLNPHVYLDTVLLVGSIGAQQPAALRGWFVAGASSASVLWFGLLGFGARWL
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHEECCCCHHHHHHHHHHHCHHHH
APWFARPKAWQALDALIGITMLALSLMLVWRVVGNF
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MITALPAPSPAFSVSLQGMALSFGLIVAIGAQNAFVLRQGLRREHVGSVVLFCAVADALL
CCCCCCCCCCCCEEEECHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITAGVMGMAQALGESPGLARALAAVGAIFLAIYGWRALRRARESHQLSTRTSGEGLGRSA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
ALAQAAAFTLLNPHVYLDTVLLVGSIGAQQPAALRGWFVAGASSASVLWFGLLGFGARWL
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHEECCCCHHHHHHHHHHHCHHHH
APWFARPKAWQALDALIGITMLALSLMLVWRVVGNF
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]